☆26Apr 8, 2025Updated 11 months ago
Alternatives and similar repositories for Bering
Users that are interested in Bering are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Computer simulator of multiplex tissue images from a set of user-defined parameters☆10Dec 13, 2022Updated 3 years ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated last year
- Immune Profiling of Atherosclerotic Plaques Identifies☆10Sep 18, 2023Updated 2 years ago
- Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data☆17Jul 6, 2023Updated 2 years ago
- Bayesian Segmentation of Spatial Transcriptomics Data☆202Dec 10, 2024Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- rna2seg☆21May 15, 2025Updated 10 months ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆70Oct 1, 2023Updated 2 years ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆77May 24, 2024Updated last year
- ☆27Jun 4, 2023Updated 2 years ago
- ☆15Feb 28, 2022Updated 4 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆17Aug 12, 2022Updated 3 years ago
- CellDrift: temporal perturbation effects for single cell data☆13Dec 3, 2022Updated 3 years ago
- nnSVG: scalable method to identify spatially variable genes (SVGs) in spatially-resolved transcriptomics data☆23May 19, 2025Updated 10 months ago
- Super-resolved spatial transcriptomics by deep data fusion☆73Mar 30, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆27Nov 21, 2022Updated 3 years ago
- ☆17Jun 27, 2024Updated last year
- A public MuSpAn page for community discussions and issue reporting.☆20Mar 8, 2026Updated 3 weeks ago
- semi-reference-based short read compression☆11Mar 5, 2019Updated 7 years ago
- ☆12Jul 25, 2019Updated 6 years ago
- Using BCR and expression for sequence embedding☆26Dec 10, 2025Updated 3 months ago
- ☆71Jan 18, 2023Updated 3 years ago
- Repository for custom module scripts for SMIDA☆13May 19, 2025Updated 10 months ago
- Identification of viral RdRPs in single-cell RNA sequencing data☆13Mar 12, 2026Updated 2 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A flexible parser generator producing output from object-oriented hierarchical context-free grammar specifications.☆12Nov 16, 2021Updated 4 years ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆160Mar 13, 2026Updated 2 weeks ago
- Single-cell immune repertoire trajectory analysis in R☆11Aug 8, 2025Updated 7 months ago
- Simulation and inference of gene regulatory networks based on transcriptional bursting☆13Oct 26, 2025Updated 5 months ago
- A performant scientific image visualization system.☆36Mar 20, 2026Updated last week
- Tutorials for Squidpy☆34Dec 18, 2025Updated 3 months ago
- Code used to benchmark Xenium☆80Jun 30, 2024Updated last year
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆267Mar 20, 2026Updated last week
- ☆53Jan 15, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- An R package for feature selection in topological spaces.☆10Aug 12, 2021Updated 4 years ago
- Fully indexable dictionaries - access/rank/select operations☆13Sep 10, 2018Updated 7 years ago
- Test genes for Spatial Variation☆15Dec 20, 2024Updated last year
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆30Mar 19, 2026Updated last week
- A package for the analysis of Imaging Mass Cytometry data☆15Updated this week
- FM-index for full-text search☆20Nov 20, 2021Updated 4 years ago
- pygor3 repository☆10Nov 20, 2025Updated 4 months ago