jian-shu-lab / Bering
☆16Updated last month
Alternatives and similar repositories for Bering:
Users that are interested in Bering are comparing it to the libraries listed below
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆54Updated last month
- ☆48Updated last month
- CAST package☆34Updated 6 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆36Updated 5 months ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆42Updated 3 years ago
- Multi-resolution Variational Inference☆22Updated last month
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆27Updated 9 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆34Updated 2 months ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆50Updated 3 months ago
- ☆47Updated 5 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆34Updated 2 months ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆34Updated last week
- ☆24Updated 2 months ago
- ☆29Updated 2 months ago
- Spatial direct messaging detected by bivariate Moran☆26Updated last week
- ☆21Updated 2 years ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 3 years ago
- Web application demonstrating 3D modeling of spatial transcriptomics☆18Updated 5 months ago
- Code used to benchmark Xenium☆57Updated 10 months ago
- A set of files to do genomics analysis on python☆18Updated 5 months ago
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆26Updated 5 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆52Updated last week
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆18Updated 2 years ago
- ☆51Updated 2 years ago
- ☆13Updated 3 years ago
- Identification of spatial homogeneous regions☆20Updated 3 months ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆23Updated last year
- ☆16Updated 9 months ago