☆32Apr 9, 2022Updated 4 years ago
Alternatives and similar repositories for Connectome
Users that are interested in Connectome are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis of smFISH data☆12Aug 27, 2018Updated 8 years ago
- Automated ingestion and conversion of various single-cell data formats, within and across species☆16Jan 26, 2026Updated 9 months ago
- Analysis of cell-cell communication at single-cell resolution☆108Sep 10, 2024Updated 2 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆61Aug 13, 2026Updated 2 months ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆25Jul 11, 2021Updated 5 years ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆90Oct 6, 2023Updated 3 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆23May 27, 2026Updated 5 months ago
- Build predicted cell-cell interaction networks from single-cell data.☆10Jan 31, 2023Updated 3 years ago
- R functions underlying OmicsNet☆21Oct 20, 2026Updated last week
- ☆27Jul 9, 2025Updated last year
- Differential analysis of multi-omics data based on the Tweedie distribution☆32Sep 28, 2026Updated last month
- Pathway-Level Single-Cell Functional Profiling of Individual Patient Samples☆11Aug 6, 2025Updated last year
- Analysis of Single Cell Expression, Normalization and Differential expression☆14Feb 29, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- deconvolution for RNAseq and bisulfite sequencing☆12Aug 17, 2020Updated 6 years ago
- Core utilities for single-cell RNA-seq☆13Jun 16, 2026Updated 4 months ago
- Automatic selection of number of principal components☆17Jun 27, 2022Updated 4 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆11Mar 4, 2025Updated last year
- Scalable, downsampling-free automated cell-population discovery, feature engineering, classification and visualization of single-cell (mo…☆12Aug 30, 2021Updated 5 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆12Apr 20, 2023Updated 3 years ago
- R package to do the Ligand Receptor Analysis Visualization☆50Aug 18, 2026Updated 2 months ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆35Aug 16, 2021Updated 5 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆37Apr 13, 2021Updated 5 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ImmuCellAI (Immune Cell Abundance Identifier) is a tool to estimate the abundance of 24 immune cells from gene expression dataset includi…☆19May 25, 2025Updated last year
- fast hierarchical clustering for large-scale single-cell data☆11Jul 11, 2021Updated 5 years ago
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆45May 20, 2026Updated 5 months ago
- A package for comparing cell type abundances between conditions☆12Oct 14, 2026Updated 2 weeks ago
- Scripts used for the Differential NicheNet analyses in the Liver Atlas paper Guilliams et al., Cell 2022☆10Jan 12, 2022Updated 4 years ago
- R package for Bioconductor submission☆41Dec 8, 2022Updated 3 years ago
- Single sample pathway analysis tools for omics data☆16Nov 9, 2024Updated last year
- ☆10May 31, 2022Updated 4 years ago
- ☆13May 25, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆16Feb 27, 2026Updated 8 months ago
- ☆15Nov 21, 2025Updated 11 months ago
- Single cell ANANSE Gene-regulatory-network analysis from Seurat objects☆11Sep 9, 2026Updated last month
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Oct 28, 2019Updated 7 years ago
- R package for metabolic enzyme enrichment anaylsis☆14Oct 24, 2025Updated last year
- ☆14Mar 20, 2021Updated 5 years ago
- co-expressed gene-set enrichment analysis☆13Nov 20, 2023Updated 2 years ago