msraredon / Connectome
☆28Updated 2 years ago
Alternatives and similar repositories for Connectome:
Users that are interested in Connectome are comparing it to the libraries listed below
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- Mosaic single cell data integration using non-overlapping features☆36Updated 2 years ago
- Hierarchical classification of cells☆23Updated 6 months ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆14Updated 4 months ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆31Updated 11 months ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆19Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆47Updated last week
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆34Updated last year
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 3 months ago
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆23Updated 4 years ago
- Cluster Identity Predictor (R package implementation)☆19Updated 2 years ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 4 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆26Updated 7 months ago
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆19Updated 3 years ago
- CAST package☆29Updated 3 months ago
- ☆35Updated 2 months ago
- R package for specialised analysis of single cell data☆36Updated 2 years ago
- ☆49Updated 6 months ago
- .h5mu files interface for Seurat☆28Updated last year
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆18Updated 2 years ago
- ☆29Updated last year
- Single-cell Orientation Tracing☆21Updated 3 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated 10 months ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆14Updated last year
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Image processing pipeline for spatial projects☆15Updated last year
- ☆38Updated 4 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆25Updated last year
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 7 months ago