🔗Genome assembly scaffolder using minimizer graphs
☆88Aug 5, 2026Updated 3 weeks ago
Alternatives and similar repositories for ntJoin
Users that are interested in ntJoin are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆95Apr 1, 2026Updated 4 months ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆67Feb 23, 2020Updated 6 years ago
- De novo genome assembler for long uncorrected reads☆233Nov 15, 2023Updated 2 years ago
- 🪡Correct and scaffold assemblies using long reads☆59Apr 1, 2026Updated 4 months ago
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆129Aug 6, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Chromosome-level scaffolding using multiple references☆170Sep 8, 2024Updated last year
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆47Feb 17, 2021Updated 5 years ago
- k-mer based assembly evaluation☆354Jul 6, 2026Updated last month
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- A fast whole-genome aligner based on de Bruijn graphs☆160Jul 6, 2025Updated last year
- An accurate GFF3/GTF lift over pipeline☆551Aug 1, 2023Updated 3 years ago
- GAPPadder is tool for closing gaps on draft genomes with short sequencing data☆29Jun 1, 2017Updated 9 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆213Nov 18, 2022Updated 3 years ago
- A genome completeness evaluation tool based on miniprot☆262Aug 17, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆15Aug 26, 2024Updated 2 years ago
- Rapid determination of appropriate reference genomes.☆103Jan 22, 2025Updated last year
- A method for variant graph genotyping based on exact alignment of k-mers☆88Apr 1, 2019Updated 7 years ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆73Jun 4, 2026Updated 2 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆576Feb 14, 2024Updated 2 years ago
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Apr 4, 2025Updated last year
- haplotypic duplication identification tool☆294Oct 30, 2025Updated 10 months ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Apr 14, 2025Updated last year
- A toolbox for pangenome analysis and threshold evaluation.☆101Jul 8, 2022Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- alignment to variation graph inducer☆165Jul 29, 2026Updated last month
- The shiny app that accompanies the ngsReports R package☆14Jun 10, 2021Updated 5 years ago
- ✏️ Genome assembly polishing & SNV detection☆74Jun 12, 2026Updated 2 months ago
- Improved long-read assembly by preserving contained reads☆30Aug 22, 2024Updated 2 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆21Jun 28, 2026Updated 2 months ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆23Apr 20, 2023Updated 3 years ago
- Bifrost graph gene caller.☆100Updated this week
- Create a tree using Mash distances☆188Oct 24, 2023Updated 2 years ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆107May 31, 2025Updated last year
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆555Updated this week
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆242Dec 29, 2023Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆31Mar 5, 2018Updated 8 years ago
- Synteny and Rearrangement Identifier☆485Jul 1, 2026Updated last month
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- An accurate and ultra-fast hybrid genome assembler☆88Apr 10, 2024Updated 2 years ago