🔗Genome assembly scaffolder using minimizer graphs
☆85Mar 10, 2026Updated this week
Alternatives and similar repositories for ntJoin
Users that are interested in ntJoin are comparing it to the libraries listed below
Sorting:
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆95Updated this week
- De novo genome assembler for long uncorrected reads☆231Nov 15, 2023Updated 2 years ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆65Feb 23, 2020Updated 6 years ago
- k-mer based assembly evaluation☆339Jun 28, 2024Updated last year
- Chromosome-level scaffolding using multiple references☆165Sep 8, 2024Updated last year
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆45Feb 17, 2021Updated 5 years ago
- 🪡Correct and scaffold assemblies using long reads☆57Mar 10, 2026Updated last week
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆121Jan 22, 2025Updated last year
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 2 years ago
- A genome completeness evaluation tool based on miniprot☆236Sep 18, 2025Updated 5 months ago
- Rapid determination of appropriate reference genomes.☆100Jan 22, 2025Updated last year
- An accurate GFF3/GTF lift over pipeline☆531Aug 1, 2023Updated 2 years ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆562Feb 14, 2024Updated 2 years ago
- A fast whole-genome aligner based on de Bruijn graphs☆158Jul 6, 2025Updated 8 months ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Apr 14, 2025Updated 11 months ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆208Nov 18, 2022Updated 3 years ago
- GAPPadder is tool for closing gaps on draft genomes with short sequencing data☆28Jun 1, 2017Updated 8 years ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆13Aug 26, 2024Updated last year
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Apr 4, 2025Updated 11 months ago
- A toolbox for pangenome analysis and threshold evaluation.☆99Jul 8, 2022Updated 3 years ago
- ✏️ Genome assembly polishing & SNV detection☆73Updated this week
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Mar 3, 2025Updated last year
- Bifrost graph gene caller.☆98Jan 20, 2026Updated last month
- haplotypic duplication identification tool☆276Oct 30, 2025Updated 4 months ago
- Improved long-read assembly by preserving contained reads☆30Aug 22, 2024Updated last year
- Synteny and Rearrangement Identifier☆453Updated this week
- Genome Annotation Without Nightmares☆46Feb 2, 2026Updated last month
- A method for variant graph genotyping based on exact alignment of k-mers☆87Apr 1, 2019Updated 6 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆21Apr 20, 2023Updated 2 years ago
- Genome size estimation from long read overlaps☆81Mar 9, 2026Updated last week
- alignment to variation graph inducer☆157Mar 6, 2026Updated last week
- An accurate and ultra-fast hybrid genome assembler☆87Apr 10, 2024Updated last year
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆238Dec 29, 2023Updated 2 years ago
- A fast approximate aligner for long DNA sequences☆287Oct 11, 2024Updated last year
- NovoGraph: building whole genome graphs from long-read-based de novo assemblies☆46Feb 23, 2021Updated 5 years ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 5 years ago
- The shiny app that accompanies the ngsReports R package☆13Jun 10, 2021Updated 4 years ago
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Oct 16, 2024Updated last year
- ☆46Jun 21, 2020Updated 5 years ago