πGenome assembly scaffolder using minimizer graphs
β86Apr 1, 2026Updated 2 months ago
Alternatives and similar repositories for ntJoin
Users that are interested in ntJoin are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- πScaffold genome sequence assemblies using linked or long read sequencing dataβ95Apr 1, 2026Updated 2 months ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assembliesβ67Feb 23, 2020Updated 6 years ago
- De novo genome assembler for long uncorrected readsβ232Nov 15, 2023Updated 2 years ago
- πͺ‘Correct and scaffold assemblies using long readsβ57Apr 1, 2026Updated 2 months ago
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.β122May 29, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform β’ AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Chromosome-level scaffolding using multiple referencesβ167Sep 8, 2024Updated last year
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.β46Feb 17, 2021Updated 5 years ago
- k-mer based assembly evaluationβ343May 21, 2026Updated 2 weeks ago
- A fast whole-genome aligner based on de Bruijn graphsβ160Jul 6, 2025Updated 11 months ago
- An accurate GFF3/GTF lift over pipelineβ539Aug 1, 2023Updated 2 years ago
- Long-reads Gap-free Chromosome-scale Assemblerβ79Mar 21, 2023Updated 3 years ago
- GAPPadder is tool for closing gaps on draft genomes with short sequencing dataβ28Jun 1, 2017Updated 9 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.β210Nov 18, 2022Updated 3 years ago
- A genome completeness evaluation tool based on miniprotβ245Sep 18, 2025Updated 8 months ago
- End-to-end encrypted email - Proton Mail β’ AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolatesβ14Aug 26, 2024Updated last year
- A method for variant graph genotyping based on exact alignment of k-mersβ87Apr 1, 2019Updated 7 years ago
- β Long Interval Nucleotide K-mer Scaffolderβ73Mar 27, 2026Updated 2 months ago
- Rapid determination of appropriate reference genomes.β101Jan 22, 2025Updated last year
- Tools for fast and flexible genome assembly scaffolding and improvementβ565Feb 14, 2024Updated 2 years ago
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.β36Apr 4, 2025Updated last year
- haplotypic duplication identification toolβ288Oct 30, 2025Updated 7 months ago
- β₯ Fast and Accurate Estimation of Evolutionary Distancesβ29Apr 14, 2025Updated last year
- alignment to variation graph inducerβ159Apr 11, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A toolbox for pangenome analysis and threshold evaluation.β102Jul 8, 2022Updated 3 years ago
- The shiny app that accompanies the ngsReports R packageβ14Jun 10, 2021Updated 4 years ago
- Improved long-read assembly by preserving contained readsβ30Aug 22, 2024Updated last year
- βοΈ Genome assembly polishing & SNV detectionβ73Updated this week
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysisβ20Apr 10, 2026Updated last month
- Bifrost graph gene caller.β98Apr 12, 2026Updated last month
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomesβ22Apr 20, 2023Updated 3 years ago
- Create a tree using Mash distancesβ188Oct 24, 2023Updated 2 years ago
- Scripts to do haplotype analysis on pan genomes.β20Sep 24, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Draw a dot plot from a paf alignmentβ42May 9, 2026Updated last month
- Meta-pipeline to identify transposable element insertions using next generation sequencing dataβ107May 31, 2025Updated last year
- Quickly search, compare, and analyze genomic and metagenomic data sets.β545Updated this week
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected readsβ240Dec 29, 2023Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.β29Mar 5, 2018Updated 8 years ago
- Synteny and Rearrangement Identifierβ471May 20, 2026Updated 2 weeks ago
- A filter algorithm with program to filter an alignment or mapping fileβ12May 15, 2025Updated last year