bergmanlab / mcclintock
Meta-pipeline to identify transposable element insertions using next generation sequencing data
☆96Updated last year
Alternatives and similar repositories for mcclintock:
Users that are interested in mcclintock are comparing it to the libraries listed below
- Collection of tools for the analysis of CpG data☆77Updated last week
- Same species annotation lift over pipeline.☆96Updated last year
- Dfam Transposable Element Tools Docker container.☆88Updated 2 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆78Updated 3 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆111Updated last month
- source code for EVM☆106Updated 2 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆174Updated 3 weeks ago
- Constructing a pangenome gene graph☆179Updated 7 months ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆90Updated last week
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago
- Plotting tools for nanopore methylation data☆90Updated 8 months ago
- A set of functions to visualise genotypes based on a VCF☆85Updated 3 years ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆156Updated last year
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 3 months ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆114Updated last week
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆135Updated 3 weeks ago
- ☆70Updated 4 years ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆96Updated this week
- Tools for working with second gen assemblies, fasta sequences, etc☆92Updated 8 years ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆96Updated 10 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆132Updated 3 months ago
- NLR-Annotator upload☆63Updated last year
- Pangenome-based genome inference☆121Updated this week
- Research release basecalling models and configurations☆107Updated 7 months ago
- Pipeline to convert a haploid assembly into diploid☆96Updated 3 weeks ago
- Python programs for processing GFF3 files☆96Updated 10 months ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆103Updated 3 weeks ago
- Phased assembly variant caller☆109Updated 2 months ago
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆101Updated 2 months ago
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆115Updated 4 years ago