bergmanlab / mcclintockLinks
Meta-pipeline to identify transposable element insertions using next generation sequencing data
☆100Updated last month
Alternatives and similar repositories for mcclintock
Users that are interested in mcclintock are comparing it to the libraries listed below
Sorting:
- Plotting tools for nanopore methylation data☆93Updated last year
- A set of functions to visualise genotypes based on a VCF☆86Updated 3 years ago
- Same species annotation lift over pipeline.☆98Updated last year
- Collection of tools for the analysis of CpG data☆86Updated last week
- Dfam Transposable Element Tools Docker container.☆95Updated 2 weeks ago
- accurate LiftOver tool for new genome assemblies☆132Updated 11 months ago
- RNA modifications detection from Nanopore dRNA-Seq data☆85Updated 2 weeks ago
- source code for EVM☆112Updated 7 months ago
- Python programs for processing GFF3 files☆98Updated last year
- Mapping pipeline for data generated using Arima-HiC☆78Updated last year
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 3 months ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 2 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 3 years ago
- Phased assembly variant caller☆121Updated 7 months ago
- NLR-Annotator upload☆68Updated last year
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆98Updated 5 months ago
- A library for running k-mers based GWAS☆110Updated 8 months ago
- Tools for the analysis of structural variation in genomes☆79Updated last year
- Find, circularise and annotate mitogenome from PacBio assemblies