Meta-pipeline to identify transposable element insertions using next generation sequencing data
☆107May 31, 2025Updated last year
Alternatives and similar repositories for mcclintock
Users that are interested in mcclintock are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Jul 27, 2023Updated 3 years ago
- Software for detecting transposable element insertions from next-generation sequencing data☆11Feb 24, 2023Updated 3 years ago
- Transposable Elements MOvement detection using LOng reads☆25Oct 21, 2026Updated last week
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Jul 31, 2017Updated 9 years ago
- Algorithm to detect germline and de novo transposon insertions☆39Aug 24, 2026Updated 2 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Transposable element polymorphism identification☆35Jul 22, 2020Updated 6 years ago
- Script for parsing and displaying node status information of the HPC Sapelo2 at UGA.☆12Nov 9, 2020Updated 5 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆22May 20, 2025Updated last year
- de novo targeted gene assembly☆22Apr 16, 2021Updated 5 years ago
- 🔗Genome assembly scaffolder using minimizer graphs☆88Aug 5, 2026Updated 2 months ago
- RelocaTE2☆19Oct 6, 2023Updated 3 years ago
- transposable element typing pipeline☆20Sep 28, 2026Updated last month
- Genotyping of segregating mobile elements insertions☆19Jul 29, 2021Updated 5 years ago
- Extensive de-novo TE Annotator☆472Sep 10, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆129Apr 17, 2026Updated 6 months ago
- non-reference transposable element detection using sTELLeR☆13Nov 6, 2024Updated last year
- Earl Grey: A fully automated TE curation and annotation pipeline☆227Updated this week
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆278Updated this week
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆27Apr 29, 2024Updated 2 years ago
- An accurate GFF3/GTF lift over pipeline☆562Aug 1, 2023Updated 3 years ago
- SRF: Satellite Repeat Finder☆111Jan 8, 2024Updated 2 years ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆99Nov 23, 2024Updated last year
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆14Mar 5, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Drosophila transposable element canonical sequences☆30Jul 11, 2022Updated 4 years ago
- De-Novo Repeat Discovery Tool☆248Updated this week
- structural variant calling and genotyping with existing tools, but, smoothly.☆268Jun 17, 2024Updated 2 years ago
- High-precision TE Annotator☆168Dec 4, 2025Updated 10 months ago
- A plant organellar Graphical Fragment Assembly toolkit☆17Oct 15, 2026Updated 2 weeks ago
- MEGAnE☆34Sep 13, 2023Updated 3 years ago
- Plot structural variant signals from many BAMs and CRAMs☆573Jul 13, 2024Updated 2 years ago
- alignment to variation graph inducer☆165Jul 29, 2026Updated 3 months ago
- lumpy: a general probabilistic framework for structural variant discovery☆346Feb 22, 2026Updated 8 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆28Feb 19, 2025Updated last year
- NovoGraph: building whole genome graphs from long-read-based de novo assemblies☆46Feb 23, 2021Updated 5 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 5 years ago
- Synteny and Rearrangement Identifier☆496Jul 1, 2026Updated 4 months ago
- A tool for discovering transposable elements and describing patterns of genome evolution☆32Apr 23, 2023Updated 3 years ago
- A fast tool for hybrid genome assembly of long and short reads☆78Apr 22, 2020Updated 6 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆31Dec 19, 2025Updated 10 months ago