bergmanlab / mcclintockLinks
Meta-pipeline to identify transposable element insertions using next generation sequencing data
☆104Updated 8 months ago
Alternatives and similar repositories for mcclintock
Users that are interested in mcclintock are comparing it to the libraries listed below
Sorting:
- Same species annotation lift over pipeline.☆97Updated 2 years ago
- Dfam Transposable Element Tools Docker container.☆101Updated last month
- Plotting tools for nanopore methylation data☆94Updated 6 months ago
- Collection of tools for the analysis of CpG data☆106Updated 7 months ago
- Mapping pipeline for data generated using Arima-HiC☆81Updated last year
- A tool to identify, orient, trim and rescue full length cDNA reads☆84Updated 3 years ago
- A set of functions to visualise genotypes based on a VCF☆88Updated 4 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆122Updated 4 months ago
- Long read aligner☆114Updated 2 years ago
- Phased assembly variant caller☆132Updated last year
- RNA modifications detection from Nanopore dRNA-Seq data☆88Updated 3 weeks ago
- Structural Variant Identification Method using Genome Assemblies☆134Updated 3 years ago
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆108Updated last week
- Research release basecalling models and configurations☆117Updated 8 months ago
- source code for EVM☆122Updated last year
- A pipeline to generate a phylogenetic tree from huge SNP data☆94Updated 2 years ago
- Application of pan-genome for population☆116Updated 3 months ago
- Tools for the analysis of structural variation in genomes☆81Updated last year
- TransposonUltimate - a holistic set of tools for transposon identification☆86Updated 3 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆109Updated 3 years ago
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆117Updated 5 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆95Updated 9 years ago
- ☆52Updated 4 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆84Updated 4 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆188Updated last year
- Detailed bioinformatics scripts and methods used in the NAM genome paper.☆89Updated last year
- Lima - Demultiplex Barcoded PacBio Samples☆68Updated 9 months ago
- A library for running k-mers based GWAS☆125Updated last year
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆112Updated 5 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆60Updated 2 years ago