Alternatives and similar repositories for mcclintock

Users that are interested in mcclintock are comparing it to the libraries listed below

• EVidenceModeler / EVidenceModeler
  source code for EVM
  ☆119Updated last year
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆99Updated 4 months ago
• ArimaGenomics / mapping_pipeline
  Mapping pipeline for data generated using Arima-HiC
  ☆81Updated last year
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆101Updated last month
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆98Updated 2 years ago
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆87Updated 3 years ago
• wdecoster / methplotlib
  Plotting tools for nanopore methylation data
  ☆94Updated 4 months ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆120Updated last month
• tleonardi / nanocompore
  RNA modifications detection from Nanopore dRNA-Seq data
  ☆87Updated 2 months ago
• sujaikumar / assemblage
  Tools for working with second gen assemblies, fasta sequences, etc
  ☆93Updated 9 years ago
• dentearl / mafTools
  Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.
  ☆109Updated 3 years ago
• zhangrengang / TEsorter
  TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
  ☆100Updated 2 weeks ago
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆111Updated 3 months ago
• ChaissonLab / LRA
  Long read aligner
  ☆115Updated 2 years ago
• DerKevinRiehl / TransposonUltimate
  TransposonUltimate - a holistic set of tools for transposon identification
  ☆84Updated 3 years ago
• starskyzheng / panpop
  Application of pan-genome for population
  ☆115Updated last month
• EichlerLab / pav
  Phased assembly variant caller
  ☆129Updated last year
• parklab / xTea
  Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
  ☆118Updated 5 months ago
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆137Updated last year
• nhansen / SVanalyzer
  Tools for the analysis of structural variation in genomes
  ☆81Updated last year
• thlee / SNPhylo
  A pipeline to generate a phylogenetic tree from huge SNP data
  ☆92Updated last year
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆146Updated this week
• voichek / kmersGWAS
  A library for running k-mers based GWAS
  ☆121Updated last year
• HuffordLab / NAM-genomes
  Detailed bioinformatics scripts and methods used in the NAM genome paper.
  ☆86Updated 10 months ago
• steuernb / NLR-Annotator
  NLR-Annotator upload
  ☆74Updated 2 years ago
• PacificBiosciences / pb-assembly
  PacBio Assembly Tool Suite: Reads in ⇨ Assembly out
  ☆118Updated 5 years ago
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆84Updated 4 years ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆117Updated 6 months ago
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆128Updated 3 years ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆83Updated 3 years ago