Alternatives and similar repositories for mcclintock

Users that are interested in mcclintock are comparing it to the libraries listed below

• wdecoster / methplotlib
  Plotting tools for nanopore methylation data
  ☆93Updated 3 weeks ago
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆90Updated last month
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆98Updated 2 years ago
• ArimaGenomics / mapping_pipeline
  Mapping pipeline for data generated using Arima-HiC
  ☆80Updated last year
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆82Updated 3 years ago
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆87Updated 3 years ago
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆100Updated last week
• tleonardi / nanocompore
  RNA modifications detection from Nanopore dRNA-Seq data
  ☆86Updated last month
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆118Updated 4 months ago
• voichek / kmersGWAS
  A library for running k-mers based GWAS
  ☆113Updated 9 months ago
• EVidenceModeler / EVidenceModeler
  source code for EVM
  ☆116Updated 8 months ago
• sujaikumar / assemblage
  Tools for working with second gen assemblies, fasta sequences, etc
  ☆93Updated 8 years ago
• DerKevinRiehl / TransposonUltimate
  TransposonUltimate - a holistic set of tools for transposon identification
  ☆84Updated 3 years ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆125Updated last week
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆115Updated 3 months ago
• ChaissonLab / LRA
  Long read aligner
  ☆115Updated 2 years ago
• EI-CoreBioinformatics / mikado
  Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…
  ☆101Updated 6 months ago
• EichlerLab / pav
  Phased assembly variant caller
  ☆125Updated 8 months ago
• NAL-i5K / GFF3toolkit
  Python programs for processing GFF3 files
  ☆99Updated last year
• harvardinformatics / GenomeAnnotation
  Best practices and workflow for genome annotation
  ☆77Updated 4 months ago
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆108Updated last year
• HuffordLab / NAM-genomes
  Detailed bioinformatics scripts and methods used in the NAM genome paper.
  ☆83Updated 7 months ago
• steuernb / NLR-Annotator
  NLR-Annotator upload
  ☆71Updated 2 years ago
• lh3 / srf
  SRF: Satellite Repeat Finder
  ☆97Updated last year
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆81Updated 4 years ago
• moiexpositoalonsolab / grenepipe
  A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…
  ☆106Updated 2 months ago
• nhansen / SVanalyzer
  Tools for the analysis of structural variation in genomes
  ☆80Updated last year
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆122Updated 2 years ago
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆108Updated 3 weeks ago
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆134Updated last year