Meta-pipeline to identify transposable element insertions using next generation sequencing data
☆107May 31, 2025Updated last year
Alternatives and similar repositories for mcclintock
Users that are interested in mcclintock are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Jul 27, 2023Updated 2 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Jul 31, 2017Updated 8 years ago
- Software for detecting transposable element insertions from next-generation sequencing data☆11Feb 24, 2023Updated 3 years ago
- Transposable Elements MOvement detection using LOng reads☆25Mar 31, 2026Updated 3 months ago
- transposable element typing pipeline☆19Mar 8, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Transposable element polymorphism identification☆34Jul 22, 2020Updated 5 years ago
- Genotyping of segregating mobile elements insertions☆19Jul 29, 2021Updated 4 years ago
- Extensive de-novo TE Annotator☆455May 12, 2026Updated last month
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Mar 5, 2021Updated 5 years ago
- SRF: Satellite Repeat Finder☆105Jan 8, 2024Updated 2 years ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆215Jun 23, 2026Updated last week
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆125Apr 17, 2026Updated 2 months ago
- An accurate GFF3/GTF lift over pipeline☆546Aug 1, 2023Updated 2 years ago
- Script for parsing and displaying node status information of the HPC Sapelo2 at UGA.☆11Nov 9, 2020Updated 5 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.