bergmanlab / mcclintockLinks
Meta-pipeline to identify transposable element insertions using next generation sequencing data
☆99Updated this week
Alternatives and similar repositories for mcclintock
Users that are interested in mcclintock are comparing it to the libraries listed below
Sorting:
- Dfam Transposable Element Tools Docker container.☆91Updated last month
- Same species annotation lift over pipeline.☆97Updated last year
- Mapping pipeline for data generated using Arima-HiC☆77Updated last year
- source code for EVM☆110Updated 6 months ago
- Collection of tools for the analysis of CpG data☆82Updated 4 months ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆104Updated last year
- Phased assembly variant caller☆116Updated 6 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆80Updated 4 years ago
- Constructing a pangenome gene graph☆188Updated this week
- A set of functions to visualise genotypes based on a VCF☆86Updated 3 years ago
- Plotting tools for nanopore methylation data☆93Updated last year
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- Algorithm For Gene Order Reconstruction in Ancestors☆75Updated 6 months ago
- NLR-Annotator upload☆66Updated last year
- A list of software for pangenomics☆114Updated 3 weeks ago
- Wally: Visualization of aligned sequencing reads and contigs☆117Updated last month
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆96Updated 3 months ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆102Updated this week
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆99Updated 3 weeks ago
- Comparison of multiple long read datasets☆132Updated 3 weeks ago
- accurate LiftOver tool for new genome assemblies☆126Updated 9 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 2 years ago
- Reference-free profiling of polyploid genomes☆116Updated 10 months ago
- Simple pileup-based variant caller☆90Updated last month
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆91Updated 10 months ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆107Updated 2 years ago
- High-precision TE Annotator☆119Updated last week
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆56Updated 2 years ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆182Updated 3 weeks ago