✏️ Genome assembly polishing & SNV detection
☆74Sep 10, 2026Updated last month
Alternatives and similar repositories for ntEdit
Users that are interested in ntEdit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Identifying repeats in high-throughput sequencing data☆16Apr 12, 2024Updated 2 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Feb 2, 2021Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Dec 11, 2019Updated 6 years ago
- The UltraPlexer is a kmer-based tool that allows assigning non-barcoded long-read sequences generated by the Oxford Nanopore Technology t…☆10Aug 16, 2021Updated 5 years ago
- Histosketching Using Little Kmers☆56May 25, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A fast tool for hybrid genome assembly of long and short reads☆78Apr 22, 2020Updated 6 years ago
- 🔗Genome assembly scaffolder using minimizer graphs☆88Aug 5, 2026Updated 2 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated 2 years ago
- An accurate and ultra-fast hybrid genome assembler☆88Apr 10, 2024Updated 2 years ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆73Jun 4, 2026Updated 4 months ago
- k-mer based assembly evaluation☆357Jul 6, 2026Updated 3 months ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Oct 13, 2022Updated 4 years ago
- A tool for Racon polishing of miniasm assemblies☆84Jul 24, 2026Updated 3 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173May 30, 2021Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 6 years ago
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆95Apr 1, 2026Updated 6 months ago
- MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a …☆37Apr 20, 2022Updated 4 years ago
- Linear-time de novo Long Read Assembler☆43Updated this week
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆67Feb 23, 2020Updated 6 years ago
- Filter of Pairwise Alignement☆45Jan 31, 2022Updated 4 years ago
- Segmental Duplication Assembler (SDA).☆44May 7, 2023Updated 3 years ago
- a short-read polishing tool for long-read assemblies☆226Jul 28, 2026Updated 3 months ago
- 🪡Correct and scaffold assemblies using long reads☆62Apr 1, 2026Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A reliable gap filling pipeline for draft genomes☆11Sep 17, 2019Updated 7 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Mar 15, 2021Updated 5 years ago
- Classify sequencing reads using MinHash.☆47Apr 6, 2020Updated 6 years ago
- 🗻 Visualization of genome/gene sequence synteny☆42Dec 13, 2023Updated 2 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Aug 15, 2018Updated 8 years ago
- Graph-based mapping of long sequences, noisy or HiFi.☆55Oct 5, 2020Updated 6 years ago
- Chromosome-level scaffolding using multiple references☆170Sep 8, 2024Updated 2 years ago
- A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long…☆67Jul 23, 2020Updated 6 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- De novo genome assembler for long uncorrected reads☆238Nov 15, 2023Updated 2 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆245Dec 29, 2023Updated 2 years ago
- A fast approximate aligner for long DNA sequences☆292Oct 11, 2024Updated 2 years ago
- Yet another k-mer analyzer☆178Dec 30, 2025Updated 9 months ago
- ☆278Jun 26, 2025Updated last year
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆533Sep 27, 2023Updated 3 years ago
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 6 years ago