songweizhi / BioSAKLinks
A Swiss-Army-Knife for Bioinformaticians
☆13Updated 2 months ago
Alternatives and similar repositories for BioSAK
Users that are interested in BioSAK are comparing it to the libraries listed below
Sorting:
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆17Updated 2 years ago
- A Hierarchical Approach to Pangenomics Inference☆12Updated last year
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Updated last year
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated last year
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆13Updated last year
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆23Updated 2 weeks ago
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Updated 5 years ago
- ZGA prokaryotic genome assembly and annotation pipeline☆13Updated last year
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated last year
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 2 months ago
- Pathway Tools multiprocessing wrapper (for PathoLogic).☆14Updated 3 months ago
- Computation of average nucleotide identity with the use of MMseqs2☆15Updated 11 months ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Updated 4 years ago
- ☆28Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- ☆15Updated last year
- Helper scripts for making phylogenies☆15Updated last year
- Download NCBI assembly genomes with ftp. rsync, ascp☆12Updated 3 years ago
- Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs☆20Updated 6 years ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆11Updated 4 years ago
- Consensus genome annotation using OMA☆27Updated 4 months ago
- Microbial agile accurate SNP Typer☆29Updated last year
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files, rename fasta files (prefix a…☆22Updated 3 weeks ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆14Updated 3 weeks ago
- Genome-Genome circle synteny☆25Updated last year
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆18Updated 5 years ago
- An R package to infer and analyze synteny networks from protein sequences☆34Updated 3 months ago
- Finding regions of similarity between plasmids☆16Updated 3 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago