A Swiss-Army-Knife for Bioinformaticians
☆15Mar 20, 2026Updated 3 weeks ago
Alternatives and similar repositories for BioSAK
Users that are interested in BioSAK are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Linking MAGs with 16S rRNA marker genes☆27Feb 8, 2025Updated last year
- PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes☆26Dec 4, 2023Updated 2 years ago
- An R package to perform systematic quality checks on comparative genomics analyses☆12Mar 5, 2026Updated last month
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆17Nov 24, 2025Updated 4 months ago
- ☆17Feb 16, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data☆13Jan 28, 2026Updated 2 months ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆14Apr 4, 2026Updated last week
- Gene tree - species tree reconciliation from gene tree distributions☆39Mar 13, 2026Updated last month
- Helper scripts for making phylogenies☆15Jun 7, 2024Updated last year
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆14Jul 30, 2024Updated last year
- Estimating gene family turnover rates by likelihood-based methods☆12Aug 17, 2020Updated 5 years ago
- Estimate node ages of a phylogeny by approximating the phylogenetic likelihood with a multivariate normal distribution.☆12Jun 23, 2025Updated 9 months ago
- ☆11Mar 11, 2025Updated last year
- ☆12Feb 16, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated last year
- ☆16Updated this week
- Module and script to remove contamination in assembled genomes before submission to ncbi☆14Jul 28, 2025Updated 8 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆47Feb 5, 2026Updated 2 months ago
- Gene Family Annotation Workflow☆11Mar 26, 2024Updated 2 years ago
- A comparative genomics workflow using Nextflow, conda, Julia and R☆50Apr 24, 2024Updated last year
- Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs☆20Sep 18, 2019Updated 6 years ago
- ☆14Oct 27, 2025Updated 5 months ago
- Analyzer of Gene and Species Trees☆11Aug 8, 2016Updated 9 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Horizontal gene transfer (HGT) identification pipeline☆71May 17, 2023Updated 2 years ago
- Introduction to Nanopore Sequencing - Prac material and presentations from The Omics Australia Tutorials Sydney (TOAST) workshop 19th - 2…☆10Jan 12, 2019Updated 7 years ago
- ☆58Dec 30, 2020Updated 5 years ago
- Scripts for calculating features and regression of prokaryote OGT☆25Feb 13, 2024Updated 2 years ago
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated 3 months ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆17Feb 5, 2022Updated 4 years ago
- Calculate the dn/ds (also pn and ps) value of cds☆14Jul 11, 2020Updated 5 years ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Mar 26, 2023Updated 3 years ago
- Extract metadata from biosamples in NCBI☆17Mar 12, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆23Jan 21, 2026Updated 2 months ago
- Inferring natural selection by comparative population genomic analysis across species☆26Oct 31, 2023Updated 2 years ago
- Pipeline for generate Ks plots of transcriptome data.☆12Dec 27, 2017Updated 8 years ago
- ZGA prokaryotic genome assembly and annotation pipeline☆13Sep 13, 2024Updated last year
- A simulator for horizontal gene transfer (HGT) in microbial communities☆10Oct 5, 2020Updated 5 years ago
- KBase distribution module for RASTtk.☆13Sep 14, 2020Updated 5 years ago
- simple and not slow ORF caller☆23Apr 7, 2026Updated last week