Alternatives and similar repositories for PanSyn

Users that are interested in PanSyn are comparing it to the libraries listed below

• lardo / khaper
  ☆28Updated 3 years ago
• symgenoevolab / SyntenyFinder
  SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…
  ☆31Updated 7 months ago
• zhangrengang / SOI
  Robust identification of orthologous Synteny with the Orthology Index
  ☆29Updated last week
• yanyew / SynGAP
  ☆39Updated 9 months ago
• bcgsc / ntSynt-viz
  Multi-genome synteny block visualization tool
  ☆43Updated 7 months ago
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆36Updated last year
• Dee-chen / Tree2gd
  ☆41Updated 2 years ago
• SwiftSeal / resistify
  Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…
  ☆39Updated this week
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated last year
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆46Updated 3 months ago
• amsession / Kmer-based-Subgenome-Mapping
  ☆21Updated last year
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆29Updated 3 years ago
• Argonum-Clever2 / mike
  ☆31Updated 5 months ago
• chenym1 / genetribe
  A tool for performing collinearity-incorporating homology inference
  ☆32Updated last year
• LiaOb21 / colora
  A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…
  ☆29Updated 3 months ago
• i10labtitech / GINGER
  ☆29Updated last year
• sabifo4 / Tutorial_MCMCtree
  MCMCtree tutorials
  ☆24Updated last year
• Kirovez / pyTanFinder
  Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
  ☆12Updated 6 years ago
• ShiuLab / PseudogenePipeline
  ☆40Updated 2 years ago
• Zhenlisme / heliano
  HELIANO is a software for detection and classification of Helitron-like elements.
  ☆30Updated 2 months ago
• NBISweden / TransposonPSI
  TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…
  ☆14Updated 5 years ago
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆27Updated 3 weeks ago
• schmeing / gapless
  Gapless provides combined scaffolding, gap-closing and assembly correction with long reads
  ☆37Updated 2 years ago
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆21Updated 10 months ago
• GDKO / AvP
  Automatic evaluation of HGTs
  ☆30Updated 6 months ago
• JiaoLab2021 / SynDiv
  A tool for quick and accurate calculation of syntenic diversity.
  ☆42Updated 7 months ago
• zhangrengang / subgenome_phasing_example
  An Example of Subgenome Phasing for Complex Allopolyploidy
  ☆13Updated 3 months ago
• bichangwei / PMAT
  An efficient assembly tool for plant mitochondrial genome
  ☆63Updated last year
• molevol-ub / bitacora
  BITACORA: A Bioinformatics tool for gene family annotation
  ☆47Updated 2 months ago
• hewm2008 / RectChr
  Multi-level visualization of genomic statistical variables on rectangular chromosomes
  ☆40Updated last week