Alternatives and similar repositories for PanSyn:

Users that are interested in PanSyn are comparing it to the libraries listed below

• zhangrengang / SOI
  Robust identification of orthologous Synteny with the Orthology Index
  ☆13Updated 2 weeks ago
• lardo / khaper
  ☆27Updated 2 years ago
• yanyew / SynGAP
  ☆32Updated 4 months ago
• symgenoevolab / SyntenyFinder
  SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…
  ☆28Updated 2 months ago
• amsession / Kmer-based-Subgenome-Mapping
  ☆20Updated 7 months ago
• Dee-chen / Tree2gd
  ☆39Updated 2 years ago
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆35Updated 7 months ago
• TimothyStephens / Dinoflagellate_Annotation_Workflow
  Dinoflagellate Annotation Workflow
  ☆14Updated 2 years ago
• CarineRey / pcoc
  Convergent substitution detection tool based on the PCOC model
  ☆30Updated 3 years ago
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆42Updated last year
• chenym1 / genetribe
  A tool for performing collinearity-incorporating homology inference
  ☆29Updated last year
• i10labtitech / GINGER
  ☆27Updated last year
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated last year
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆25Updated 3 years ago
• Longhui-Ren / Ancestral_Genome_Reconstruction
  Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO
  ☆13Updated 6 years ago
• jkimlab / DESCHRAMBLER
  ☆22Updated last year
• ShiuLab / PseudogenePipeline
  ☆39Updated last year
• heche-psb / wgd
  wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication
  ☆33Updated last month
• Kirovez / pyTanFinder
  Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
  ☆12Updated 6 years ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆35Updated 2 years ago
• dePamphilis / PlantTribes
  PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics
  ☆35Updated last year
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆20Updated 5 months ago
• LiaOb21 / colora
  A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…
  ☆18Updated last week
• CMB-BNU / PloidyFrost
  reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph
  ☆16Updated last year
• linyuiz / zgtools
  zgtools: A pipeline that allows for the convenient acquisition of T2T (Telomere-to-Telomere) genomes.
  ☆28Updated 2 months ago
• GDKO / AvP
  Automatic evaluation of HGTs
  ☆27Updated last month
• kavonrtep / dante
  Domain based annotation of transposable elements
  ☆19Updated last month