☆22Jan 29, 2024Updated 2 years ago
Alternatives and similar repositories for PanSyn
Users that are interested in PanSyn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Robust identification of orthologous Synteny with the Orthology Index☆43Jun 26, 2026Updated last week
- An R package for comparative transcriptomic analyses of hybrids and their progenitors☆17Sep 5, 2024Updated last year
- BOSTIn is a new, user-friendly phylogenetic artifact identification package.☆12Jun 12, 2026Updated 3 weeks ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Visualing species tree from ASTRAL with gene tree discordance☆33Updated this week
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆12May 7, 2023Updated 3 years ago
- Gene tree - species tree reconciliation from gene tree distributions☆42Apr 30, 2026Updated 2 months ago
- Pangenome analysis using random forests☆16Dec 9, 2025Updated 6 months ago
- Identification of conserved non-coding sequences in plants☆45Jun 9, 2026Updated 3 weeks ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- ☆20Apr 24, 2022Updated 4 years ago
- ContScout sequence contamination filter tool☆27Dec 28, 2025Updated 6 months ago
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆12Jun 19, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆21Nov 2, 2024Updated last year
- Code repository for the T2T-Y paper☆24Jul 11, 2023Updated 2 years ago
- TR annotation tool VAMPIRE☆18Jun 22, 2026Updated 2 weeks ago
- Python script for creating and analyzing simulated bpp datasets published in Flouris et al. 2019.☆10May 12, 2019Updated 7 years ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Oct 21, 2021Updated 4 years ago
- A shiny application to visualize MCscan result☆37Jun 26, 2026Updated last week
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆14Aug 5, 2020Updated 5 years ago
- Genomics 3D Visualizer☆14Jun 14, 2024Updated 2 years ago
- Detecting multi-genome synteny using minimizer graph mapping☆108Jun 12, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆87Jun 16, 2026Updated 2 weeks ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- A pipeline to select oligonucleotides for fluorescence in situ hybridization (Oligo-FISH).☆25Feb 28, 2026Updated 4 months ago
- A novel genome assembly pipeline based on deep learning☆71Dec 2, 2024Updated last year
- Make colorful identity heatmaps of genomic sequence☆139May 24, 2024Updated 2 years ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆112Nov 17, 2025Updated 7 months ago
- Gene prediction software☆71Oct 22, 2022Updated 3 years ago
- This is a series of scripts on the rapid construction of target interval consensus sequences from bam files and the rapid construction of…☆17Jan 12, 2024Updated 2 years ago
- Suite of command-line software for high-performance graphical analysis of ChIP-seq/RNA-seq/ATAC-seq data☆21May 2, 2022Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆13Sep 11, 2025Updated 9 months ago
- RepeatIdentifier☆74Mar 19, 2025Updated last year
- 一些关于基因组及转录组的知识☆46Dec 29, 2025Updated 6 months ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆35Jan 15, 2025Updated last year
- Pangenome Mutation-Annotated Networks☆45Jun 6, 2026Updated last month
- ☆26Jan 26, 2026Updated 5 months ago
- A tool for quick and accurate calculation of syntenic diversity.☆44Sep 22, 2025Updated 9 months ago