dschrempf / mcmc-dateLinks
Estimate node ages of a phylogeny by approximating the phylogenetic likelihood with a multivariate normal distribution.
☆10Updated 2 months ago
Alternatives and similar repositories for mcmc-date
Users that are interested in mcmc-date are comparing it to the libraries listed below
Sorting:
- Bayesian co-estimation of phylogenies and multiple alignments via MCMC☆47Updated last week
- Fast Neighbor-Joining and other distance-based methods for phylogenetics☆14Updated last year
- Linear-time rooting of phylogenetic trees☆16Updated 2 years ago
- Script that labels phylogenetic clades based on the clade of the nearest neighbor using patristic distances determined from the tree.☆11Updated 9 months ago
- Program for estimating dN/dS in overlapping genes (OLGs)☆13Updated 2 years ago
- Searching for Horizontal Gene Transfer☆10Updated 5 years ago
- mytax is a tool for building custom taxonomies, useful for nucleotide sequence classification☆11Updated 6 months ago
- AMR/VF LGT focused bacterial genomics analysis workflow☆27Updated 5 months ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆46Updated this week
- A genome-wide IM blockwise likelihood estimation toolkit☆17Updated last year
- ☆12Updated 4 years ago
- A repo with supplementary material for a manuscript on the origin of SARS-CoV-2 origins☆11Updated 5 years ago
- Alignment-Based Sequence extraction☆15Updated 3 years ago
- The Metagenomics-Toolkit is a scalable, data agnostic workflow that automates the analysis of short and long metagenomic reads obtained f…☆16Updated 2 weeks ago
- EM-PCA for Ultra-low Coverage Sequencing Data☆18Updated 2 weeks ago
- ☆12Updated last month
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆21Updated 11 months ago
- aweMAGs: a fully automated workflow for eukariotic MAGs☆16Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Metagenomic Analysis in Real Time☆28Updated this week
- Coprolite host Identification pipeline☆13Updated 2 months ago
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆74Updated last month
- mGEMS Genomic epidemiology with mixed samples☆15Updated last year
- A listing of software, tools and databases useful for virome analysis☆44Updated this week
- ☆72Updated 3 months ago
- ☆68Updated last year
- Small utility script to submit genomes to PHASTER for phage detection☆24Updated 3 years ago
- Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgam…☆48Updated 4 months ago
- A metatranscriptomic pipeline optimized for the study of microeukaryotes.☆16Updated 10 months ago
- Simple Manipulation Of Trees☆13Updated last month