Estimate node ages of a phylogeny by approximating the phylogenetic likelihood with a multivariate normal distribution.
☆12Jun 23, 2025Updated last year
Alternatives and similar repositories for mcmc-date
Users that are interested in mcmc-date are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Apr 29, 2025Updated last year
- Evolution simulator with extinct lineages☆25Apr 3, 2025Updated last year
- Markov chain Monte Carlo with Metropolis-Hasting algorithm☆19Jun 23, 2025Updated last year
- A repo with supplementary material for a manuscript on the origin of SARS-CoV-2 origins☆11Jun 26, 2020Updated 6 years ago
- ☆82May 2, 2026Updated 5 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- a toolkit for evaluation of the lenght of k-mer in a given genome dataset for alignment-free phylogenimic analysis.☆15Nov 21, 2024Updated last year
- A Swiss-Army-Knife for Bioinformaticians☆15Jul 26, 2026Updated 2 months ago
- Linear-time rooting of phylogenetic trees☆18Jun 12, 2023Updated 3 years ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆25Updated this week
- CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification …☆12Mar 20, 2022Updated 4 years ago
- ASTRAL for PaRalogs and Orthologs☆24Sep 13, 2022Updated 4 years ago
- A tool to root phylogenies☆24Sep 5, 2024Updated 2 years ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆17Nov 24, 2025Updated 10 months ago
- Methods for the analyses described in Álvarez-Carretero et al. 2022 (https://doi.org/10.1038/s41586-021-04341-1)☆21Dec 15, 2025Updated 9 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgam…☆55May 14, 2025Updated last year
- ☆18Feb 16, 2026Updated 7 months ago
- Indel-aware consensus for aligned BAM☆22Aug 16, 2025Updated last year
- Gene tree - species tree reconciliation from gene tree distributions☆44Oct 5, 2026Updated last week
- Elegant UCI chess engine in Haskell☆13Jan 21, 2025Updated last year
- Modeling gene duplication, loss, and coalescence (through parsimony)☆10Jun 18, 2020Updated 6 years ago
- 📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria☆42Oct 28, 2025Updated 11 months ago
- Noise generation for Haskell☆20Jul 25, 2026Updated 2 months ago
- Database-Integrated Genome Screening (DIGS) tool. Explore the dark genome using BLAST and a relational database.☆12Aug 25, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Mapping-Assisted Targeted-Assembly for Metagenomics☆27Mar 28, 2025Updated last year
- DEPRECATED: Use bevel instead.☆25Dec 17, 2020Updated 5 years ago
- Command interpreter using Continuation monad and variants☆12Dec 7, 2019Updated 6 years ago
- Code to perform homolog detectability analyses as described in Weisman et al. 2020 (https://www.biorxiv.org/content/10.1101/2020.02.27.96…☆18Nov 18, 2024Updated last year
- Simulation package for getting gene tree distributions and loci / SNPs from input tree topologies and migration / Ne scenarios. Wraps aro…☆14Jul 29, 2026Updated 2 months ago
- ☆16Jun 18, 2020Updated 6 years ago
- Bioinformatics / Explore oligonucleotide composition similarity between assembly contigs or scaffolds to detect contaminant DNA.☆12Feb 27, 2019Updated 7 years ago
- Captures several data from the PC version of Genshin Impact GUI through screen scraping☆13Nov 3, 2020Updated 5 years ago
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Oct 30, 2018Updated 7 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Examples for Streamly☆32Sep 7, 2026Updated last month
- Pipeline for phasing sequence data in polyploids. Designed for target enrichment data, but probably works with other data too.☆12Jun 20, 2024Updated 2 years ago
- A collection of Genshin Impact's in-game books available in EPUB format.☆19Aug 23, 2026Updated last month
- A bunch of extra functionality for Hakyll-based sites.☆11Sep 30, 2015Updated 11 years ago
- An R package to perform systematic quality checks on comparative genomics analyses☆12Mar 5, 2026Updated 7 months ago
- Bayesian Nonparametric Mixture Models in Julia☆14Oct 25, 2017Updated 8 years ago
- Calculate indel trajectory likelihoods using methods of Miklós, Lunter & Holmes (2004), De Maio (2020), and Holmes (2020)☆14Sep 17, 2022Updated 4 years ago