dschrempf / mcmc-dateLinks
Estimate node ages of a phylogeny by approximating the phylogenetic likelihood with a multivariate normal distribution.
☆12Updated 5 months ago
Alternatives and similar repositories for mcmc-date
Users that are interested in mcmc-date are comparing it to the libraries listed below
Sorting:
- Fast Neighbor-Joining and other distance-based methods for phylogenetics☆14Updated last year
- Bayesian co-estimation of phylogenies and multiple alignments via MCMC☆48Updated this week
- Program for estimating dN/dS in overlapping genes (OLGs)☆14Updated 3 years ago
- Searching for Horizontal Gene Transfer☆10Updated 5 years ago
- The Metagenomics-Toolkit is a scalable, data agnostic workflow that automates the analysis of short and long metagenomic reads obtained f…☆21Updated this week
- A phylogeny dating method using least-squares algorithms and criteria☆30Updated last year
- Linear-time rooting of phylogenetic trees☆17Updated 2 years ago
- mytax is a tool for building custom taxonomies, useful for nucleotide sequence classification☆12Updated 2 months ago
- guix packages for bioinformatics software☆23Updated last year
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- Gene tree - species tree reconciliation from gene tree distributions☆37Updated 3 weeks ago
- AMR/VF LGT focused bacterial genomics analysis workflow☆28Updated 8 months ago
- Alignment-Based Sequence extraction☆15Updated 3 years ago
- ☆13Updated 7 years ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Updated 7 months ago
- Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgam…☆50Updated 7 months ago
- ☆22Updated 4 months ago
- Code for computing various support scores for internodes☆19Updated 5 years ago
- Metagenomic Analysis in Real Time☆28Updated 3 weeks ago
- Pipeline for phasing sequence data in polyploids. Designed for target enrichment data, but probably works with other data too.☆12Updated last year
- EM-PCA for Ultra-low Coverage Sequencing Data☆18Updated last week
- Recombination-free trees☆62Updated 3 months ago
- An integrated database for improving taxonomic classification of 16S Ribosomal RNA sequences.☆19Updated 2 years ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆63Updated last week
- Automatic eukaryotic taxonomic classification☆28Updated 7 months ago
- A tool to root phylogenies☆23Updated last year
- mGEMS Genomic epidemiology with mixed samples☆15Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆53Updated 3 months ago
- ☆20Updated last year
- spruceup☆25Updated 4 months ago