BenoitMorel / GeneRaxLinks
☆77Updated 8 months ago
Alternatives and similar repositories for GeneRax
Users that are interested in GeneRax are comparing it to the libraries listed below
Sorting:
- Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file☆76Updated last year
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆93Updated 2 weeks ago
- ☆89Updated 2 months ago
- PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datas…☆35Updated this week
- A massively parallel tool for model selection and tree inference on thousands of genes☆51Updated last year
- Synteny Imager☆65Updated last month
- HGTphyloDetect is a versatile toolbox to identify horizontal gene transfer (HGT) events combined with phylogenetic analysis.☆44Updated 2 years ago
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆79Updated 4 months ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆62Updated last month
- Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…☆14Updated 4 years ago
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated last year
- biodiversity genomics course by Nicol Rueda, Karin Näsvall, Fernando Seixas and Joana Meier from the Wellcome Sanger Institute☆66Updated 2 weeks ago
- Recovering genes from targeted sequence capture data☆131Updated last month
- Implementation of the TreeShrink problem☆54Updated last year
- STAG: Species Tree from All Genes☆35Updated 7 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆63Updated 2 years ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆55Updated last year
- TSEBRA: Transcript Selector for BRAKER☆49Updated 2 months ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆112Updated 5 months ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆103Updated 2 months ago
- ☆34Updated 5 months ago
- Automated de novo assembly of whole chloroplast genomes.☆48Updated last year
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆36Updated last month
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated 3 weeks ago
- paml documentation and tutorials☆68Updated last month
- FastOMA is a scalable software package to infer orthology relationship.☆90Updated 2 weeks ago
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆48Updated 10 months ago
- A comparative genomics workflow using Nextflow, conda, Julia and R☆49Updated last year
- Reorients assembled microbial sequences☆132Updated 5 months ago
- Mobile Genetic Elements Retrieving Tool☆16Updated 8 months ago