☆78Jun 2, 2025Updated 11 months ago
Alternatives and similar repositories for GeneRax
Users that are interested in GeneRax are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Drawing reconciled phylogenetic trees allowing 1, 2 or 3 reconcillation levels☆25Oct 24, 2025Updated 6 months ago
- Gene tree - species tree reconciliation from gene tree distributions☆39Updated this week
- ☆16Apr 11, 2026Updated 3 weeks ago
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆11Jun 19, 2025Updated 10 months ago
- ASTRAL for PaRalogs and Orthologs☆22Sep 13, 2022Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Estimate node ages of a phylogeny by approximating the phylogenetic likelihood with a multivariate normal distribution.☆12Jun 23, 2025Updated 10 months ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Apr 29, 2025Updated last year
- A tool to root phylogenies☆23Sep 5, 2024Updated last year
- Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgam…☆54May 14, 2025Updated 11 months ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Oct 21, 2021Updated 4 years ago
- ☆17Feb 16, 2026Updated 2 months ago
- ☆13Nov 12, 2025Updated 5 months ago
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆241Updated this week
- Ancestral character reconstruction and visualisation for rooted phylogenetic trees☆38Apr 17, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A massively parallel tool for model selection and tree inference on thousands of genes☆51Mar 4, 2024Updated 2 years ago
- ☆42Apr 2, 2024Updated 2 years ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆65Apr 17, 2026Updated 2 weeks ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆23Jan 21, 2026Updated 3 months ago
- A versatile and scalable algorithm for rogue taxon identification. Also includes implementations of the maximum agreement subtree, leaf s…☆23Aug 19, 2021Updated 4 years ago
- PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **techni…☆192Jan 29, 2026Updated 3 months ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆46Nov 21, 2019Updated 6 years ago
- orthology assignment using phylogenetic and network analyses☆55Jan 21, 2026Updated 3 months ago
- Align proteins to genomes with splicing and frameshift☆400Jan 5, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆33Jun 1, 2022Updated 3 years ago
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆12Dec 20, 2022Updated 3 years ago
- Version 5 of the CAFE phylogenetics software☆165Mar 16, 2026Updated last month
- Algorithm For Gene Order Reconstruction in Ancestors☆82Aug 16, 2025Updated 8 months ago
- Analyzer of Gene and Species Trees☆11Aug 8, 2016Updated 9 years ago
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆84Apr 19, 2026Updated last week
- HyPhy: Hypothesis testing using Phylogenies☆254Mar 23, 2026Updated last month
- A program for multimodel inference on speciation and trait evolution☆35Sep 4, 2017Updated 8 years ago
- The complete sequence of a Chinese individual☆12Oct 8, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- a broadly applicable tool for automated gene identification and retrieval☆41Apr 13, 2026Updated 2 weeks ago
- ☆21Dec 30, 2025Updated 4 months ago
- ☆28May 22, 2020Updated 5 years ago
- HyPhy standalone analyses☆53Jan 5, 2026Updated 3 months ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆205Nov 23, 2025Updated 5 months ago
- phylogenetics tools for linux (and other mostly posix compliant) computers☆123Apr 18, 2026Updated 2 weeks ago
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 6 years ago