BenoitMorel / GeneRaxLinks
☆77Updated 7 months ago
Alternatives and similar repositories for GeneRax
Users that are interested in GeneRax are comparing it to the libraries listed below
Sorting:
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆92Updated last year
- PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datas…☆35Updated last month
- Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file☆75Updated last year
- ☆89Updated last month
- Recovering genes from targeted sequence capture data☆130Updated 2 weeks ago
- Synteny Imager☆65Updated last month
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated last year
- Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…☆14Updated 4 years ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆51Updated last year
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆36Updated 3 weeks ago
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated last week
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆146Updated 2 weeks ago
- HGTphyloDetect is a versatile toolbox to identify horizontal gene transfer (HGT) events combined with phylogenetic analysis.☆44Updated 2 years ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆79Updated 8 months ago
- Implementation of the TreeShrink problem☆53Updated last year
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆79Updated 4 months ago
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆38Updated last year
- Automated de novo assembly of whole chloroplast genomes.☆48Updated last year
- TSEBRA: Transcript Selector for BRAKER☆49Updated 2 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆85Updated 4 years ago
- biodiversity genomics course by Nicol Rueda, Karin Näsvall, Fernando Seixas and Joana Meier from the Wellcome Sanger Institute☆65Updated last month
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆80Updated 2 years ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆61Updated 3 weeks ago
- STAG: Species Tree from All Genes☆34Updated 7 years ago
- Reorients assembled microbial sequences☆131Updated 5 months ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆102Updated last month
- k-mer learning materials☆83Updated 11 months ago
- Tutorial about R package PopGenome☆43Updated 6 years ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆49Updated last month
- Interactive quality assessment of genome assemblies☆117Updated last month