jsdoublel / DISCOLinks
Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve orthologs and discard paralogs.
☆10Updated 5 months ago
Alternatives and similar repositories for DISCO
Users that are interested in DISCO are comparing it to the libraries listed below
Sorting:
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆11Updated 2 years ago
- ☆12Updated 2 years ago
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Updated 7 years ago
- ☆16Updated last year
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- An efficient tool for cross-population fixation index estimation on variant call format files☆10Updated last year
- Diploid genome assembly analysis tools☆14Updated last year
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Updated 2 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆35Updated last month
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- Reduce genome assembly redundancy using shared mapped k-mer method.☆15Updated 7 months ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated last year
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆20Updated 2 months ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Updated last year
- ☆14Updated this week
- Telomere compliment tools☆21Updated 3 weeks ago
- Estimating gene family turnover rates by likelihood-based methods☆12Updated 5 years ago
- ☆16Updated 2 years ago
- Domain based annotation of transposable elements☆21Updated 2 months ago
- ☆24Updated 3 weeks ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 6 years ago
- Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clin…☆16Updated last year
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆13Updated last month
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 2 months ago
- Genome alignment and synteny plots☆33Updated 2 years ago
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Updated last year
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Updated 9 months ago
- A genome assembly assessment pipeline.☆37Updated 2 years ago
- Gene Family Annotation Workflow☆11Updated last year
- Dynamic Elongation of a Genome Assembly Path☆22Updated last year