jsdoublel / DISCOLinks
Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve orthologs and discard paralogs.
☆10Updated 3 months ago
Alternatives and similar repositories for DISCO
Users that are interested in DISCO are comparing it to the libraries listed below
Sorting:
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆11Updated 2 years ago
- Diploid genome assembly analysis tools☆14Updated last year
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Updated 6 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆29Updated 2 weeks ago
- ☆11Updated 2 years ago
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated last year
- Estimating gene family turnover rates by likelihood-based methods☆12Updated 5 years ago
- ☆12Updated this week
- Reduce genome assembly redundancy using shared mapped k-mer method.☆15Updated 4 months ago
- ☆15Updated 10 months ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- An efficient tool for cross-population fixation index estimation on variant call format files☆10Updated last year
- Domain based annotation of transposable elements☆20Updated 4 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- Genome alignment and synteny plots☆31Updated 2 years ago
- ☆24Updated last year
- ☆16Updated 2 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 7 months ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Updated last year
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆13Updated 2 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆21Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆37Updated 2 years ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆20Updated last month
- Convert Tandem Repeat Finder dat file output into gff3 format☆28Updated 8 months ago
- Multi-genome synteny block visualization tool☆44Updated 7 months ago