jsdoublel / DISCOLinks
Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve orthologs and discard paralogs.
☆9Updated last week
Alternatives and similar repositories for DISCO
Users that are interested in DISCO are comparing it to the libraries listed below
Sorting:
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆11Updated 2 years ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- Diploid genome assembly analysis tools☆14Updated 9 months ago
- Reduce genome assembly redundancy using shared mapped k-mer method.☆15Updated last month
- Domain based annotation of transposable elements☆19Updated last month
- Robust identification of orthologous Synteny with the Orthology Index☆21Updated last week
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆9Updated 4 months ago
- Genome alignment and synteny plots☆30Updated 2 years ago
- ☆16Updated 2 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 9 months ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 4 months ago
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Updated 6 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆26Updated 3 months ago
- ☆12Updated 2 years ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆10Updated last year
- Estimating gene family turnover rates by likelihood-based methods☆11Updated 4 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 5 years ago
- Gene Family Annotation Workflow☆11Updated last year
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Updated 7 months ago
- ☆20Updated 10 months ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 6 years ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆12Updated 2 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated 3 weeks ago
- Some components that speed up and reduce resource cost for original ALLHiC☆14Updated this week
- Automated pipeline for running CoalHMM☆13Updated last year
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆31Updated 5 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated last year
- ☆12Updated last month
- ☆15Updated 3 years ago