Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve orthologs and discard paralogs.
☆11Jun 19, 2025Updated 8 months ago
Alternatives and similar repositories for DISCO
Users that are interested in DISCO are comparing it to the libraries listed below
Sorting:
- ☆16Feb 20, 2024Updated 2 years ago
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆12May 7, 2023Updated 2 years ago
- Ancestral flowering plant genomes reconstruction☆14Jan 23, 2023Updated 3 years ago
- BOSTIn is a new, user-friendly phylogenetic artifact identification package.☆11Jan 20, 2026Updated last month
- STRIDE: Species Tree Root Inference from Gene Duplication Events☆11Aug 28, 2018Updated 7 years ago
- Fast, accurate species tree estimation.☆12Aug 29, 2024Updated last year
- ASTRAL for PaRalogs and Orthologs☆22Sep 13, 2022Updated 3 years ago
- MP-EST estimates species trees from a set of gene trees by maximizing a pseudo-likelihood function☆12Oct 31, 2025Updated 4 months ago
- This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…☆20Oct 12, 2025Updated 4 months ago
- Reconstruction of ancestral genome maps☆16Mar 29, 2018Updated 7 years ago
- ☆24Dec 15, 2025Updated 2 months ago
- Gene tree - species tree reconciliation from gene tree distributions☆40Nov 19, 2025Updated 3 months ago
- Gene Family Annotation Workflow☆11Mar 26, 2024Updated last year
- A versatile and scalable algorithm for rogue taxon identification. Also includes implementations of the maximum agreement subtree, leaf s…☆23Aug 19, 2021Updated 4 years ago
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated last year
- A toolkit for identifying recombination and recombinant genotypes☆26Dec 3, 2025Updated 2 months ago
- Tutorial for using MCMCTree as implemented by Brown Lab at SIUC. For divergence time estimation on UCE datasets, for dendrobatid frogs.☆10Jun 19, 2020Updated 5 years ago
- MultiBreak-SV identifies structural variants from next-generation paired end data, third-generation long read data, or data from a combin…☆12Jul 19, 2016Updated 9 years ago
- Phylogenetic profiling with orthology data☆13Oct 10, 2025Updated 4 months ago
- ☆16Nov 19, 2025Updated 3 months ago
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated last month
- Estimating gene family turnover rates by likelihood-based methods☆12Aug 17, 2020Updated 5 years ago
- GeneMiner: a tool for extracting phylogenetic markers from next-generation sequencing data☆12Feb 22, 2024Updated 2 years ago
- Phylogenetic tools for Eco-phylogenetics☆14Oct 10, 2024Updated last year
- identify potential non-animal transcripts in animal transcriptomes☆12Nov 11, 2020Updated 5 years ago
- From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromoso…☆15Aug 7, 2023Updated 2 years ago
- WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.☆13Nov 18, 2025Updated 3 months ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Jan 29, 2024Updated 2 years ago
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Feb 26, 2025Updated last year
- ☆77Jun 2, 2025Updated 8 months ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆29Updated this week
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated last year
- use paired-end transcriptome reads to scaffold genomes☆11May 30, 2019Updated 6 years ago
- ☆12Jun 12, 2023Updated 2 years ago
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆35Jun 12, 2024Updated last year
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Mar 5, 2021Updated 4 years ago
- Pipeline for generate Ks plots of transcriptome data.☆12Dec 27, 2017Updated 8 years ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated last year