jsdoublel / DISCOLinks
Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve orthologs and discard paralogs.
☆10Updated 3 weeks ago
Alternatives and similar repositories for DISCO
Users that are interested in DISCO are comparing it to the libraries listed below
Sorting:
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆11Updated 2 years ago
- Diploid genome assembly analysis tools☆14Updated 9 months ago
- Robust identification of orthologous Synteny with the Orthology Index☆23Updated this week
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Updated 6 years ago
- Estimating gene family turnover rates by likelihood-based methods☆11Updated 4 years ago
- ☆15Updated 8 months ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 9 months ago
- ☆12Updated 2 weeks ago
- Domain based annotation of transposable elements☆19Updated 2 months ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated last year
- ☆16Updated 2 years ago
- This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…☆20Updated this week
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆19Updated last week
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆12Updated 2 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- Genome alignment and synteny plots☆30Updated 2 years ago
- K-mer based classifier for Y-contig identification from Whole Genome Assemblies☆12Updated 5 years ago
- Reduce genome assembly redundancy using shared mapped k-mer method.☆15Updated 2 months ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆13Updated last year
- Gene Family Annotation Workflow☆11Updated last year
- Software GMATA for SSR mining, marker designing, genotyping, plot etc.☆14Updated 11 months ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆10Updated last year
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 5 months ago
- use paired-end transcriptome reads to scaffold genomes☆11Updated 6 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 5 years ago
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Updated 11 months ago
- ☆24Updated last year
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Updated 7 months ago