AuReMe / metage2metaboLinks
From annotated genomes to metabolic screening in large scale microbiotas
☆64Updated 3 months ago
Alternatives and similar repositories for metage2metabo
Users that are interested in metage2metabo are comparing it to the libraries listed below
Sorting:
- ARG normalization by mapping to the ARO ontology.☆58Updated last month
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 3 weeks ago
- ☆39Updated 2 months ago
- ☆44Updated last week
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆59Updated 4 months ago
- CLI tool to annotate genes with KOfam☆86Updated 2 years ago
- Teaching materials for SymbNET course: from MAGs to GEMs☆14Updated last year
- Binning Virus Genomes from Metagenomes☆66Updated 3 years ago
- Convert GTDB taxonomy to NCBI taxdump format☆74Updated 2 years ago
- ☆75Updated this week
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆96Updated last month
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆74Updated 2 months ago
- ☆57Updated last year
- PHANOTATE: a gene caller for phages.☆78Updated 8 months ago
- viralVerify: viral contig verification tool☆71Updated 4 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆62Updated 3 weeks ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆96Updated 2 years ago
- ☆56Updated last year
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆77Updated 2 years ago
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 11 months ago
- Metagenomics-related extended functionalities to samtools☆21Updated 2 years ago
- ☆56Updated 3 weeks ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆76Updated 8 months ago
- A toolkit for prokaryotic comparative genomics☆50Updated 7 months ago
- KEGG Module Evaluation Tool☆30Updated last year
- Linking MAGs with 16S rRNA marker genes☆26Updated 6 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 3 weeks ago
- SMETANA: a tool to analyse interactions in microbial communities☆62Updated 3 months ago