From annotated genomes to metabolic screening in large scale microbiotas
☆77Jul 27, 2026Updated last month
Alternatives and similar repositories for metage2metabo
Users that are interested in metage2metabo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SMETANA: a tool to analyse interactions in microbial communities☆74May 6, 2025Updated last year
- Python package to study microbial communities using metabolic modeling.☆136Aug 27, 2026Updated last week
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆274May 13, 2026Updated 3 months ago
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆223Aug 26, 2026Updated last week
- ☆18Jun 5, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Bioinformatics program inStrain☆192Mar 12, 2026Updated 5 months ago
- http://huttenhower.sph.harvard.edu/waafle☆24Jun 16, 2026Updated 2 months ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆19Feb 5, 2022Updated 4 years ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆339Aug 16, 2026Updated 3 weeks ago
- Automatic eukaryotic taxonomic classification☆33May 9, 2025Updated last year
- Classify metagenomic contigs as eukaryotic or prokaryotic☆46Feb 17, 2023Updated 3 years ago
- Python interface for running COMETS simulations and analyzing the results☆16May 19, 2026Updated 3 months ago
- CarveMe: genome-scale metabolic model reconstruction☆218Sep 12, 2025Updated 11 months ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆234Mar 24, 2026Updated 5 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Workflow for MAG quality assessment and taxonomical annotation.☆15May 26, 2026Updated 3 months ago
- A functional profiler for metagenomes using FracMinHash☆21Apr 20, 2026Updated 4 months ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆79Updated this week
- Pathway Tools multiprocessing wrapper (for PathoLogic).☆16Dec 18, 2025Updated 8 months ago
- ☆51Jun 11, 2025Updated last year
- Computation of Microbial Ecosystems in Time and Space☆28Aug 19, 2026Updated 2 weeks ago
- ☆57Mar 29, 2026Updated 5 months ago
- mergem is a python package and command-line tool for merging, comparing, and translating genome-scale metabolic models☆15Aug 20, 2025Updated last year
- Inference of microbial interaction networks from large-scale heterogeneous abundance data☆93Oct 9, 2025Updated 10 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- map Illumina metagenomes to genomes!☆39Jan 22, 2026Updated 7 months ago
- ☆13Apr 5, 2021Updated 5 years ago
- Supplementary data for co-occurrence manuscript☆10Dec 19, 2019Updated 6 years ago
- Minimal Microbial Consortia creation tools☆13Jan 28, 2022Updated 4 years ago
- Scripts to build high-quality genome-scale metabolic model by using a deep neural network to guide gapfilling☆19May 26, 2026Updated 3 months ago
- Population genomics from metagenomes☆13Sep 1, 2024Updated 2 years ago
- ☆10Jul 4, 2019Updated 7 years ago
- An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as…☆70Updated this week
- ☆43Mar 26, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Profiler for metagenomics based on NGLess☆14Feb 22, 2024Updated 2 years ago
- SemiBin: metagenomics binning with self-supervised deep learning☆174Aug 3, 2026Updated last month
- PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes☆26Dec 4, 2023Updated 2 years ago
- Python3 wrapper for parallelized gene prediction using Prodigal☆11Mar 3, 2023Updated 3 years ago
- ☆15Oct 14, 2023Updated 2 years ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆118Sep 1, 2026Updated last week
- Assessing the quality of metagenome-derived genome bins using machine learning☆277Mar 20, 2025Updated last year