Alternatives and similar repositories for metage2metabo

Users that are interested in metage2metabo are comparing it to the libraries listed below

• EBI-Metagenomics / EukCC
  Tool to estimate genome quality of microbial eukaryotes
  ☆37Updated last month
• cdanielmachado / smetana
  SMETANA: a tool to analyse interactions in microbial communities
  ☆63Updated 4 months ago
• deprekate / PHANOTATE
  PHANOTATE: a gene caller for phages.
  ☆77Updated 9 months ago
• kelwyres / Bactabolize
  ☆39Updated 3 months ago
• emmamglass / reconstructor
  This repository contains all source code in the reconstructor python package, installation instructions, important file dependencies, and…
  ☆22Updated 3 months ago
• BigDataBiology / argNorm
  ARG normalization by mapping to the ARO ontology.
  ☆58Updated last month
• franciscozorrilla / SymbNET
  Teaching materials for SymbNET course: from MAGs to GEMs
  ☆14Updated last year
• EBI-Metagenomics / mettannotator
  ☆75Updated this week
• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆86Updated 2 years ago
• nick-youngblut / gtdb_to_taxdump
  Convert GTDB taxonomy to NCBI taxdump format
  ☆73Updated 2 years ago
• jlw-ecoevo / gRodon2
  ☆46Updated this week
• jolespin / veba
  A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…
  ☆97Updated last month
• cmkobel / CompareM2
  🦠🧬🧑‍💻📇 Microbial genomes-to-report pipeline
  ☆62Updated this week
• soedinglab / WIsH
  Predict prokaryotic host for phage metagenomic sequences
  ☆51Updated last year
• shenwei356 / gtdb-taxdump
  GTDB taxonomy taxdump files with trackable TaxIds
  ☆55Updated 4 months ago
• mdsufz / MuDoGeR
  MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.
  ☆87Updated last year
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆62Updated last week
• robotoD / GenoVi
  GenoVi, an automated customizable circular genome visualizer for bacteria and archaea
  ☆96Updated 2 years ago
• AnantharamanLab / vRhyme
  Binning Virus Genomes from Metagenomes
  ☆65Updated 3 years ago
• raw-lab / MetaCerberus
  Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…
  ☆60Updated 5 months ago
• linxingchen / cobra
  A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…
  ☆76Updated last week
• susiegriggo / Phynteny
  Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny
  ☆52Updated 3 months ago
• snayfach / MAGpurify
  Improvement of metagenome-assembled genomes
  ☆53Updated 5 years ago
• ablab / viralVerify
  viralVerify: viral contig verification tool
  ☆72Updated 4 years ago
• hzi-bifo / traitar
  From genomes to phenotypes: Traitar, the microbial trait analyzer
  ☆60Updated 6 years ago
• Gibbons-Lab / pipelines
  Pipelines used in the lab.
  ☆14Updated 5 months ago
• wwood / galah
  More scalable dereplication for metagenome assembled genomes
  ☆68Updated 3 weeks ago
• moshi4 / COGclassifier
  A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
  ☆71Updated 4 months ago
• bjtully / BioData
  All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")
  ☆77Updated 2 years ago
• ziyewang / MetaBinner
  ☆57Updated last year