Alternatives and similar repositories for MicrobeAnnotator

Users that are interested in MicrobeAnnotator are comparing it to the libraries listed below

• chklovski / CheckM2
  Assessing the quality of metagenome-derived genome bins using machine learning
  ☆211Updated 2 months ago
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆121Updated last year
• linnabrown / run_dbcan
  Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…
  ☆149Updated last month
• biobakery / phylophlan
  Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
  ☆144Updated last month
• barricklab / breseq
  breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is inte…
  ☆162Updated 2 weeks ago
• bluenote-1577 / sylph
  ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.
  ☆230Updated 2 months ago
• kblin / ncbi-acc-download
  Download files from NCBI Entrez by accession
  ☆123Updated 9 months ago
• apcamargo / genomad
  geNomad: Identification of mobile genetic elements
  ☆237Updated 2 months ago
• epi2me-labs / wf-metagenomics
  Metagenomic classification of long-read sequencing data
  ☆83Updated 3 weeks ago
• MrOlm / inStrain
  Bioinformatics program inStrain
  ☆169Updated 3 weeks ago
• art-egorov / lovis4u
  Bioinformatics tool for Locus Visualisation
  ☆106Updated 3 weeks ago
• xiezhq / ISEScan
  A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome
  ☆95Updated last month
• gamcil / cblaster
  Find clustered hits from a BLAST search
  ☆114Updated 5 months ago
• medema-group / BiG-SCAPE
  Similarity networks of biosynthetic gene clusters
  ☆115Updated this week
• neherlab / pan-genome-analysis
  Processing pipeline for pan-genome visulization and exploration
  ☆139Updated last year
• gbouras13 / pharokka
  fast phage annotation program
  ☆163Updated 2 weeks ago
• CompSynBioLab-KoreaUniv / FunGAP
  FunGAP: fungal Genome Annotation Pipeline
  ☆111Updated last year
• bluenote-1577 / skani
  Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.
  ☆198Updated 10 months ago
• EBI-Metagenomics / genomes-catalogue-pipeline
  MGnify genome analysis pipeline
  ☆106Updated this week
• cmks / DAS_Tool
  DAS Tool
  ☆149Updated last year
• MGXlab / CAT_pack
  CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…
  ☆212Updated last month
• AdmiralenOla / Scoary
  Pan-genome wide association studies
  ☆198Updated last year
• rrwick / Autocycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆137Updated this week
• motu-tool / mOTUs
  motus - a tool for marker gene-based OTU (mOTU) profiling
  ☆154Updated last year
• AstrobioMike / GToTree
  A user-friendly workflow for phylogenomics
  ☆213Updated last week
• gbouras13 / hybracter
  Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
  ☆127Updated 3 weeks ago
• B-UMMI / chewBBACA
  BSR-Based Allele Calling Algorithm
  ☆145Updated last month
• biobakery / biobakery_workflows
  bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…
  ☆113Updated this week
• rrwick / Perfect-bacterial-genome-tutorial
  ☆135Updated 11 months ago
• snayfach / MGV
  Supporting code for uncultivated gut virus manuscript
  ☆72Updated last year