Pipeline for metabolic annotation of microbial genomes
☆153Mar 20, 2025Updated last year
Alternatives and similar repositories for MicrobeAnnotator
Users that are interested in MicrobeAnnotator are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆668Aug 7, 2026Updated 2 weeks ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆336Aug 16, 2026Updated last week
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Apr 4, 2023Updated 3 years ago
- Bioinformatics program inStrain☆192Mar 12, 2026Updated 5 months ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆232Mar 24, 2026Updated 5 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Build a partitioned pangenome graph from microbial genomes☆308Updated this week
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆82Sep 20, 2023Updated 2 years ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆276Mar 20, 2025Updated last year
- A hybrid assembly and MAG recovery pipeline (and more!)☆118Aug 5, 2026Updated 2 weeks ago
- ATLAS - Three commands to start analyzing your metagenome data☆407May 28, 2026Updated 2 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆262May 13, 2026Updated 3 months ago
- DDBJ Fast Annotation and Submission Tool☆87Jul 22, 2026Updated last month
- geNomad: Identification of mobile genetic elements☆328Mar 29, 2026Updated 4 months ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆618May 20, 2026Updated 3 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆273May 13, 2026Updated 3 months ago
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆220Aug 13, 2026Updated last week
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆386Aug 10, 2026Updated 2 weeks ago
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆110Jan 22, 2026Updated 7 months ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆169Apr 23, 2025Updated last year
- Rapid prokaryotic genome annotation☆992Jan 6, 2026Updated 7 months ago
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated 11 months ago
- A package to annotate protein sequences☆63Feb 23, 2025Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆348Jul 24, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Rapid comparison and dereplication of genomes☆353Jul 16, 2026Updated last month
- Toolbox for comparative genomics of MAGs☆91Jul 30, 2026Updated 3 weeks ago
- A comprehensive prokaryotic genome annotation pipeline☆91Updated this week
- SemiBin: metagenomics binning with self-supervised deep learning☆174Aug 3, 2026Updated 2 weeks ago
- post processing of bacterial pangenome gene presence/absence matrices☆67Jan 19, 2026Updated 7 months ago
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆128Aug 6, 2026Updated 2 weeks ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆190Mar 17, 2026Updated 5 months ago
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆109Dec 11, 2023Updated 2 years ago
- A complete pipeline for metagenomic analysis☆451Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Graph-based assembly phasing☆101Nov 25, 2025Updated 8 months ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆23Apr 20, 2023Updated 3 years ago
- A user-friendly workflow for phylogenomics☆232Updated this week
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆476Jul 28, 2023Updated 3 years ago
- NCBI Prokaryotic Genome Annotation Pipeline☆388Updated this week
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆316Feb 3, 2026Updated 6 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆62Jul 31, 2026Updated 3 weeks ago