cruizperez / MicrobeAnnotatorLinks
Pipeline for metabolic annotation of microbial genomes
☆150Updated 7 months ago
Alternatives and similar repositories for MicrobeAnnotator
Users that are interested in MicrobeAnnotator are comparing it to the libraries listed below
Sorting:
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆158Updated 4 months ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆152Updated 6 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated last year
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆257Updated 2 weeks ago
- Bioinformatics program inStrain☆177Updated 5 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆232Updated 7 months ago
- A user-friendly workflow for phylogenomics☆221Updated 2 months ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆144Updated this week
- Processing pipeline for pan-genome visulization and exploration☆141Updated 2 years ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆161Updated last year
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆99Updated 6 months ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆78Updated 2 years ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆225Updated 2 weeks ago
- Download files from NCBI Entrez by accession☆129Updated last year
- DAS Tool☆159Updated last year
- Find clustered hits from a BLAST search☆123Updated this week
- ☆147Updated last year
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆62Updated 4 years ago
- fast phage annotation program☆182Updated 3 weeks ago
- geNomad: Identification of mobile genetic elements☆264Updated last month
- Pan-genome wide association studies☆204Updated last year
- A toolbox for comparative genomics.☆105Updated 4 years ago
- Bioinformatics tool for Locus Visualisation☆125Updated 5 months ago
- Similarity networks of biosynthetic gene clusters☆133Updated 2 weeks ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆198Updated 2 months ago
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆136Updated 2 years ago
- FunGAP: fungal Genome Annotation Pipeline☆111Updated 4 months ago
- DDBJ Fast Annotation and Submission Tool☆83Updated last month
- A tool for generating consensus long-read assemblies for bacterial genomes☆193Updated last month
- Virus Identification By iteRative ANnoTation☆174Updated last year