cruizperez / MicrobeAnnotatorLinks
Pipeline for metabolic annotation of microbial genomes
☆150Updated 9 months ago
Alternatives and similar repositories for MicrobeAnnotator
Users that are interested in MicrobeAnnotator are comparing it to the libraries listed below
Sorting:
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆155Updated 8 months ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆159Updated 7 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- Bioinformatics program inStrain☆181Updated 8 months ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆145Updated last month
- DAS Tool☆166Updated last year
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆231Updated 3 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆283Updated 3 months ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆166Updated last month
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆80Updated 2 years ago
- Supporting code for uncultivated gut virus manuscript☆78Updated 2 years ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆244Updated 9 months ago
- fast phage annotation program☆188Updated last week
- ☆153Updated last year
- Virus Identification By iteRative ANnoTation☆184Updated last year
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆62Updated 4 years ago
- Open-source usearch☆128Updated 5 months ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆101Updated last month
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆85Updated last year
- A user-friendly workflow for phylogenomics☆225Updated last month
- Find clustered hits from a BLAST search☆130Updated this week
- Bioinformatics tool for Locus Visualisation☆157Updated 2 months ago
- Similarity networks of biosynthetic gene clusters☆147Updated last week
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆77Updated 8 months ago
- Download files from NCBI Entrez by accession☆132Updated last year
- Processing pipeline for pan-genome visulization and exploration☆143Updated 2 years ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆101Updated 2 years ago
- SMETANA: a tool to analyse interactions in microbial communities☆66Updated 8 months ago
- DDBJ Fast Annotation and Submission Tool☆83Updated 4 months ago
- A toolbox for comparative genomics.☆108Updated 4 years ago