Ecogenomics / gtdb-species-clusters
Toolkit for establishing, updating, and validating GTDB species clusters
☆20Updated this week
Related projects ⓘ
Alternatives and complementary repositories for gtdb-species-clusters
- A method of assessing sequence complexity based on kmer frequencies☆28Updated 6 years ago
- Set of utilities on sequences and BAM files☆25Updated 3 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated last year
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 2 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated last year
- Strain Prediction and Analysis with Representative SEquence☆18Updated 2 weeks ago
- MAG Circularization Method☆33Updated 2 years ago
- TAXnomic Profile Aggregation and STAndardisation☆34Updated 3 weeks ago
- MAGScoT - a MAG scoring and refinement tool☆28Updated last month
- OPAL: Open-community Profiling Assessment tooL☆27Updated 3 months ago
- Microbial agile accurate SNP Typer☆29Updated 10 months ago
- strain-level analysis tools☆33Updated last month
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆29Updated 3 months ago
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆17Updated 2 months ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- A repository with scripts to run pipeline that are commonly used in the Meren Lab☆11Updated 6 years ago
- MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome☆20Updated last month
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆25Updated 3 months ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆24Updated 6 months ago
- KEGG Module Evaluation Tool☆26Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆28Updated last year
- Find Unique genomic Regions☆29Updated this week
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- A toolkit for prokaryotic comparative genomics☆25Updated this week
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Discover and annotate the virome☆31Updated last month
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆25Updated last week
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆31Updated 3 years ago