Ecogenomics / gtdb-species-clustersLinks
Toolkit for establishing, updating, and validating GTDB species clusters
☆20Updated last week
Alternatives and similar repositories for gtdb-species-clusters
Users that are interested in gtdb-species-clusters are comparing it to the libraries listed below
Sorting:
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- ☆42Updated last year
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated 2 years ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 9 months ago
- Trimming tool for Oxford Nanopore sequence data☆22Updated 4 years ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆39Updated 3 years ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆25Updated 2 years ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆40Updated 11 months ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆64Updated last month
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- Find Unique genomic Regions☆30Updated this week
- strain-level analysis tools☆39Updated last year
- Strain Resolution ON Graphs☆48Updated 2 years ago
- Convert genbank files to a swath of other formats☆20Updated 2 years ago
- Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains☆19Updated 6 months ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆42Updated 3 weeks ago
- TransAnnot - a fast transcriptome annotation pipeline☆19Updated 9 months ago
- A package to annotate protein sequences☆60Updated 8 months ago
- Scalable creating/updating of metagenome profiling databases☆62Updated 4 months ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 3 years ago
- Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆47Updated 3 months ago
- MAG Circularization Method☆32Updated 3 years ago
- Influenza genome analysis Nextflow workflow☆23Updated last month
- Gene-flank analysis tool☆33Updated 10 months ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆30Updated last year
- NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.☆29Updated 5 months ago