Toolkit for establishing, updating, and validating GTDB species clusters
☆20Jun 17, 2026Updated last week
Alternatives and similar repositories for gtdb-species-clusters
Users that are interested in gtdb-species-clusters are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A post-processing tool to reclassify Kraken 2 output based on the confidence score and/or minimum minimizer hit groups.☆11Nov 10, 2025Updated 7 months ago
- ☆31Aug 9, 2013Updated 12 years ago
- Profiler for metagenomics based on NGLess☆13Feb 22, 2024Updated 2 years ago
- A very simple BLAST filtering pipeline☆19Mar 28, 2014Updated 12 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25May 18, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Database of genomes integrated from the gut microbiome and other environments☆45Feb 3, 2023Updated 3 years ago
- R package for Statistical Inference of Associations between Microbial Communities And host phenoType☆59Updated this week
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- Scripts used in the analysis of C elegans dRNAseq data☆14Apr 7, 2024Updated 2 years ago
- DeepMicrobes: taxonomic classification for metagenomics with deep learning☆106Sep 17, 2022Updated 3 years ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated last year
- the Metagenomic test for Presence Or Absence of Pathways☆13Mar 4, 2019Updated 7 years ago
- sensitive and precise assembly of short sequencing reads☆167Oct 11, 2024Updated last year
- Deep learning for Metagenome Assembly Error Detection☆26Nov 30, 2020Updated 5 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Nov 11, 2019Updated 6 years ago
- A JBrowse plugin for creating sashimi or junction style plots from RNA-seq data☆14Apr 30, 2021Updated 5 years ago
- Docker images of bioinformatics software☆21Jun 15, 2017Updated 9 years ago
- StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…☆13Mar 7, 2024Updated 2 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Aug 23, 2023Updated 2 years ago
- 🧬 Efficient parallelized peta-scale protein database search☆39Jan 4, 2024Updated 2 years ago
- Domain-Agnostic Supervised Learning with Hyperdimensional Computing☆13Jun 14, 2024Updated 2 years ago
- A Python interface to gb-io, a fast GenBank parser written in Rust.☆24May 21, 2026Updated last month
- Multiplex Primer Design☆12May 3, 2020Updated 6 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Package to plot phylogenies with custom shapes☆24Apr 17, 2024Updated 2 years ago
- LoFreq Version 3☆27Feb 25, 2021Updated 5 years ago
- Interactive tools for metagenome visualization and binning in R☆27Jun 28, 2018Updated 8 years ago
- From annotated genomes to metabolic screening in large scale microbiotas☆74May 26, 2026Updated last month
- NEFF Calculator and MSA File Converter☆14May 6, 2026Updated last month
- ☆15Dec 8, 2022Updated 3 years ago
- The Microbiome Interpretable Temporal Rule Engine☆46May 26, 2021Updated 5 years ago
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆11Jul 13, 2020Updated 5 years ago
- Analyses for Manuscript "Sensitive detection of renal cell carcinoma using plasma and urine cell-free DNA methylomes"☆12Aug 4, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- SV genotyper for long reads with a variation graph☆16Apr 15, 2026Updated 2 months ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆608May 20, 2026Updated last month
- A versatile toolkit for k-mers with taxonomic information☆84Aug 28, 2025Updated 10 months ago
- Retrieve sequences flanked by an arbitrary number of primers from a nucleotide collection.☆11Jun 11, 2021Updated 5 years ago
- Homebrew tap for formulae to build ARB (http://www.arb-home.de) and related software.☆14May 22, 2026Updated last month
- Provides a local database of in-house and published genomes for Bacteria and Archaea from NCBI☆24Sep 3, 2014Updated 11 years ago
- Assembly Based ReAligner☆75May 24, 2018Updated 8 years ago