Ecogenomics / gtdb-species-clustersLinks
Toolkit for establishing, updating, and validating GTDB species clusters
☆21Updated 2 months ago
Alternatives and similar repositories for gtdb-species-clusters
Users that are interested in gtdb-species-clusters are comparing it to the libraries listed below
Sorting:
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆40Updated 11 months ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆25Updated 2 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆26Updated 2 years ago
- ☆42Updated last year
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- shotgun pipeline☆12Updated 6 years ago
- OPAL: Open-community Profiling Assessment tooL☆30Updated 7 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆65Updated last month
- Extract lineage CSVs from NCBI for use with sourmash lca.☆29Updated last year
- A snakemake workflow for metagenomic projects☆14Updated 2 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated last year
- Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains☆19Updated 4 months ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆39Updated 9 months ago
- Strain Resolution ON Graphs☆48Updated 2 years ago
- TransAnnot - a fast transcriptome annotation pipeline☆18Updated 7 months ago
- strain-level analysis tools☆39Updated 10 months ago
- CAMITAX: Taxon labels for microbial genomes☆30Updated last year
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- Scalable creating/updating of metagenome profiling databases☆63Updated 2 months ago
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆39Updated 2 years ago
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆41Updated last year
- A package to annotate protein sequences☆60Updated 6 months ago
- Influenza genome analysis Nextflow workflow☆22Updated 3 weeks ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Updated last year
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated last year
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Updated 5 months ago
- MAGScoT - a MAG scoring and refinement tool☆36Updated 10 months ago
- ☆28Updated 3 years ago