Ecogenomics / gtdb-species-clustersLinks
Toolkit for establishing, updating, and validating GTDB species clusters
☆20Updated 3 weeks ago
Alternatives and similar repositories for gtdb-species-clusters
Users that are interested in gtdb-species-clusters are comparing it to the libraries listed below
Sorting:
- ☆42Updated last year
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- OPAL: Open-community Profiling Assessment tooL☆29Updated 10 months ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆24Updated 2 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- Trimming tool for Oxford Nanopore sequence data☆22Updated 4 years ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆25Updated 2 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 9 months ago
- Pangenome analysis of eukaryotes.☆20Updated 5 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆65Updated last month
- Find Unique genomic Regions☆32Updated 3 weeks ago
- A package to annotate protein sequences☆60Updated 8 months ago
- Strain Resolution ON Graphs☆48Updated 2 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆31Updated last year
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆40Updated this week
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago
- shotgun pipeline☆12Updated 6 years ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆39Updated 3 years ago
- A method of assessing sequence complexity based on kmer frequencies☆33Updated 7 years ago
- Scalable creating/updating of metagenome profiling databases☆62Updated 4 months ago
- GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data☆17Updated last year
- TransAnnot - a fast transcriptome annotation pipeline☆19Updated 9 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- Extract lineage CSVs from NCBI for use with sourmash lca.☆29Updated 2 years ago
- Set of utilities on sequences and BAM files☆26Updated 4 years ago
- A simple-to-use tool for visualizing and comparing genome contexts for numerous genomes☆18Updated last year
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated 3 months ago
- ☆29Updated 4 years ago