KoslickiLab / fmh-funprofilerLinks
A functional profiler for metagenomes using FracMinHash
☆16Updated 3 months ago
Alternatives and similar repositories for fmh-funprofiler
Users that are interested in fmh-funprofiler are comparing it to the libraries listed below
Sorting:
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated 10 months ago
- MAG Circularization Method☆33Updated 3 years ago
- MAGScoT - a MAG scoring and refinement tool☆35Updated 7 months ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 10 months ago
- ☆21Updated 4 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆35Updated 2 years ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Updated 8 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- scripts for microbiome analysis☆11Updated 10 months ago
- ☆22Updated 2 years ago
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆22Updated last month
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 9 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Calculate assocations between genes and traits☆23Updated 2 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated last week
- ☆21Updated 4 months ago
- Detect contigs of complete circular genomes☆23Updated 6 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- Metabolic scanning and annotation of Metagenomes☆10Updated 2 months ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- ☆25Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆29Updated 4 months ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 2 weeks ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 7 months ago
- Plot microbiome time series in parallel☆26Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- ☆14Updated 2 weeks ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Dadaist2 🟨 Highway to R☆13Updated 3 months ago