KoslickiLab / fmh-funprofilerLinks
A functional profiler for metagenomes using FracMinHash
☆20Updated 4 months ago
Alternatives and similar repositories for fmh-funprofiler
Users that are interested in fmh-funprofiler are comparing it to the libraries listed below
Sorting:
- MAG Circularization Method☆32Updated 2 weeks ago
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆25Updated last week
- ☆28Updated 9 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 3 months ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Updated last year
- Discover and annotate the virome☆53Updated last month
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- MAGScoT - a MAG scoring and refinement tool☆37Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆17Updated 3 years ago
- Plot microbiome time series in parallel☆27Updated 2 years ago
- Calculate assocations between genes and traits☆29Updated 8 months ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆14Updated last year
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Automatic eukaryotic taxonomic classification☆28Updated 6 months ago
- ☆22Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Resolving Species Level Classification Using Emu☆14Updated last year
- Bacterial GWAS analysis☆46Updated 3 weeks ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆31Updated last month
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆36Updated 2 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 6 months ago
- Interpretative standards for AMR genotypes☆25Updated last week
- strain-level analysis tools☆39Updated last year
- Assessing and Improving the quality of metagenomic assemblies☆30Updated 3 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated last year
- ☆24Updated 9 months ago