jotech / gapseq
Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
☆180Updated this week
Alternatives and similar repositories for gapseq:
Users that are interested in gapseq are comparing it to the libraries listed below
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆237Updated 9 months ago
- CarveMe: genome-scale metabolic model reconstruction☆167Updated 3 weeks ago
- Pipeline for metabolic annotation of microbial genomes☆145Updated last month
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆196Updated 8 months ago
- antiSMASH☆206Updated last week
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆149Updated 2 weeks ago
- A user-friendly workflow for phylogenomics☆212Updated 2 weeks ago
- breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is inte…☆161Updated last month
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆276Updated this week
- Download files from NCBI Entrez by accession☆122Updated 8 months ago
- Tool to plot synteny and structural rearrangements between genomes☆303Updated last month
- A tool for generating consensus long-read assemblies for bacterial genomes☆320Updated 11 months ago
- Download FASTQ files from SRA or ENA repositories.☆323Updated last month
- An updated pipeline for pangenome investigation☆297Updated 2 months ago
- Eukaryotic Genome Annotation Pipeline☆346Updated 2 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆222Updated last month
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆506Updated last month
- Bacterial ribosomal RNA predictor☆243Updated last year
- Build a partitioned pangenome graph from microbial genomes☆265Updated this week
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆227Updated 4 years ago
- geNomad: Identification of mobile genetic elements☆234Updated last month
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆338Updated last year
- fast phage annotation program☆161Updated 3 months ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆211Updated 2 weeks ago
- Rapid comparison and dereplication of genomes☆285Updated 3 weeks ago
- CAMISIM: Simulating metagenomes and microbial communities☆204Updated 9 months ago
- MGnify genome analysis pipeline☆106Updated this week
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆141Updated last month
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆112Updated 3 weeks ago
- ATLAS - Three commands to start analyzing your metagenome data☆387Updated last month