jotech / gapseqLinks
Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
☆201Updated last week
Alternatives and similar repositories for gapseq
Users that are interested in gapseq are comparing it to the libraries listed below
Sorting:
- CarveMe: genome-scale metabolic model reconstruction☆193Updated 4 months ago
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆254Updated last year
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆231Updated last month
- antiSMASH☆240Updated 2 months ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆155Updated 8 months ago
- Similarity networks of biosynthetic gene clusters☆149Updated 2 weeks ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆159Updated 7 months ago
- Pipeline for metabolic annotation of microbial genomes☆150Updated 10 months ago
- A user-friendly workflow for phylogenomics☆225Updated last month
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆314Updated last month
- CAMISIM: Simulating metagenomes and microbial communities☆221Updated last month
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆244Updated this week
- breseq is a computational pipeline for finding mutations relative to a reference sequence using high-throughput DNA resequencing data. It…☆174Updated 2 months ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆166Updated last month
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆283Updated 3 months ago
- Build a partitioned pangenome graph from microbial genomes☆291Updated last month
- Bacterial ribosomal RNA predictor☆272Updated last week
- customizable pipeline to identify viral sequences from (meta)genomic data☆279Updated last year
- Rapid comparison and dereplication of genomes☆326Updated 2 months ago
- Open-source usearch☆128Updated 5 months ago
- Python package to study microbial communities using metabolic modeling.☆115Updated 2 weeks ago
- Download files from NCBI Entrez by accession☆132Updated last year
- Assessing the quality of metagenome-derived genome bins using machine learning☆246Updated 10 months ago
- SMETANA: a tool to analyse interactions in microbial communities☆66Updated 8 months ago
- PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **techni…☆181Updated last month
- A robust, extensible metagenomics pipeline☆174Updated this week
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆223Updated 3 months ago
- High-quality circular representations of taxonomic and phylogenetic trees☆106Updated last year
- geNomad: Identification of mobile genetic elements☆282Updated 2 months ago
- MGnify genome analysis pipeline☆108Updated last week