xiaoli-dong / metaerg
☆42Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for metaerg
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 3 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆43Updated last year
- ☆45Updated 6 months ago
- Improvement of metagenome-assembled genomes☆49Updated 4 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆43Updated 4 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆68Updated 4 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆48Updated 6 months ago
- ☆56Updated last month
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 3 years ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆27Updated 4 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆48Updated 3 weeks ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆56Updated last year
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆41Updated last year
- IslandPath standalone software☆31Updated last year
- IS mapping software☆51Updated 2 years ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆27Updated 9 months ago
- whole genome MLST analysis☆38Updated 5 months ago
- ☆43Updated last year
- Metagenomics-related extended functionalities to samtools☆19Updated last year
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆14Updated this week
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated last year
- A tool for removing redundant genomes from a set of assemblies☆68Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆49Updated this week
- Phylogeny Enhanded Prediction of PAN-genome☆39Updated 4 years ago
- Scalable creating/updating of metagenome profiling databases☆58Updated last year
- Microbiome classification pipeline☆64Updated 7 months ago
- Estimate metagenomic coverage and sequence diversity☆46Updated 3 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆29Updated last year
- An integrated database for improving taxonomic classification of 16S Ribosomal RNA sequences.☆18Updated last year
- CLI tool to annotate genes with KOfam☆72Updated last year