cdanielmachado / carvemeLinks
CarveMe: genome-scale metabolic model reconstruction
☆194Updated 5 months ago
Alternatives and similar repositories for carveme
Users that are interested in carveme are comparing it to the libraries listed below
Sorting:
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆204Updated last week
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆254Updated last year
- Python package to study microbial communities using metabolic modeling.☆115Updated 2 weeks ago
- antiSMASH☆243Updated 2 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆319Updated last week
- SMETANA: a tool to analyse interactions in microbial communities☆66Updated 9 months ago
- Pipeline for metabolic annotation of microbial genomes☆150Updated 10 months ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆158Updated 9 months ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆159Updated 7 months ago
- Find clustered hits from a BLAST search☆132Updated 3 weeks ago
- Similarity networks of biosynthetic gene clusters☆152Updated last week
- geNomad: Identification of mobile genetic elements☆286Updated 3 months ago
- memote – the genome-scale metabolic model test suite☆144Updated 5 months ago
- Download files from NCBI Entrez by accession☆134Updated last year
- Systematic search of all known anti-phage systems.☆144Updated 3 weeks ago
- fast phage annotation program☆193Updated last week
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆232Updated 3 weeks ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆279Updated last year
- motus - a tool for marker gene-based OTU (mOTU) profiling☆168Updated 2 months ago
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆248Updated this week
- Rapid comparison and dereplication of genomes☆326Updated 3 months ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆176Updated last month
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆290Updated last week
- Phage Annotation using Protein Structures☆148Updated last week
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆223Updated 3 weeks ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆248Updated 10 months ago
- MGnify genome analysis pipeline☆108Updated last month
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆218Updated last year
- CAMISIM: Simulating metagenomes and microbial communities☆221Updated last week
- Build a partitioned pangenome graph from microbial genomes☆292Updated last month