☆51Jun 11, 2025Updated last year
Alternatives and similar repositories for Bactabolize
Users that are interested in Bactabolize are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code used to analyse and plot metadata of metagenomic binning tools☆14Aug 22, 2024Updated 2 years ago
- ☆18Jun 5, 2026Updated 3 months ago
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆13Oct 11, 2022Updated 3 years ago
- Teaching materials for SymbNET course: from MAGs to GEMs☆15Jan 8, 2024Updated 2 years ago
- Genomewide Epistasis Analysis on Bacteria☆15Aug 7, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- CarveMe: genome-scale metabolic model reconstruction☆222Sep 12, 2025Updated last year
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated 8 months ago
- From annotated genomes to metabolic screening in large scale microbiotas☆77Jul 27, 2026Updated last month
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 5 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆91Sep 9, 2026Updated 2 weeks ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆110Jun 25, 2023Updated 3 years ago
- Pipelines used in the lab.☆15Mar 26, 2025Updated last year
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆23Aug 17, 2026Updated last month
- Uncover organisms' metabolic blueprints☆18Jun 18, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- COnstraint Based Reconstruction and EXascale Analysis (in Julia)☆19Sep 26, 2025Updated 11 months ago
- Bifrost graph gene caller.☆101Aug 31, 2026Updated 3 weeks ago
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆274May 13, 2026Updated 4 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆681Aug 7, 2026Updated last month
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆112Oct 20, 2023Updated 2 years ago
- All scripts used for the analysis of the twilight of the pan-genome, and scripts available for others to apply similar analysis☆20Mar 30, 2021Updated 5 years ago
- agent based modelling☆39Aug 28, 2024Updated 2 years ago
- ☆11Mar 11, 2025Updated last year
- Improvement of metagenome-assembled genomes☆59Mar 17, 2020Updated 6 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Follow up to Grace Blackwell's 661k dataset, for 2023☆156Jun 10, 2026Updated 3 months ago
- Accurate and robust inference of microbial growth dynamics from metagenomic sequencing☆21May 11, 2022Updated 4 years ago
- BEAV: Bacterial Element Annotation reVamped☆77Aug 21, 2025Updated last year
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆81Sep 20, 2023Updated 3 years ago
- PaperBLAST: find papers about a protein or its homologs☆54Sep 8, 2026Updated 2 weeks ago
- Python interface for running COMETS simulations and analyzing the results☆16May 19, 2026Updated 4 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆264May 13, 2026Updated 4 months ago
- ☆20Jan 23, 2019Updated 7 years ago
- a short-read polishing tool for long-read assemblies☆226Jul 28, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆46Jun 1, 2026Updated 3 months ago
- BGC Detection and Classification Using Deep Learning☆161Nov 11, 2023Updated 2 years ago
- A set of programs for the taxonomic analysis of genetic sequences☆15Jun 12, 2023Updated 3 years ago
- viralFlye pipeline☆19Aug 12, 2024Updated 2 years ago
- Pipeline to design taxon-specific primes in defined bacterial communities.☆26Jan 28, 2025Updated last year
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆45Sep 3, 2024Updated 2 years ago
- CLI tool to annotate genes with KOfam☆106Jun 6, 2023Updated 3 years ago