EnvGen / POGENOMLinks
Population genomics from metagenomes
☆11Updated 9 months ago
Alternatives and similar repositories for POGENOM
Users that are interested in POGENOM are comparing it to the libraries listed below
Sorting:
- ☆25Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆34Updated 3 years ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Updated last year
- ☆16Updated 3 weeks ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Updated last month
- ☆13Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆30Updated 2 years ago
- Prophage Activity Estimator☆26Updated last year
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Updated 5 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated last week
- ☆16Updated 2 years ago
- Hydrocarbon biodegradation gene annotation☆15Updated 2 years ago
- ☆20Updated 3 years ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Updated last year
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆20Updated 5 months ago
- ☆13Updated 7 years ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆18Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated 11 months ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆24Updated 2 years ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated 11 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 10 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 7 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆35Updated 2 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- http://huttenhower.sph.harvard.edu/waafle☆16Updated 5 months ago
- ☆20Updated 9 months ago
- ☆24Updated 6 years ago