Population genomics from metagenomes
☆13Sep 1, 2024Updated last year
Alternatives and similar repositories for POGENOM
Users that are interested in POGENOM are comparing it to the libraries listed below
Sorting:
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Feb 26, 2020Updated 6 years ago
- Prediction of microbial interactions in complex communities☆11Aug 14, 2024Updated last year
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Apr 4, 2023Updated 2 years ago
- ☆57Updated this week
- Automatic eukaryotic taxonomic classification☆29May 9, 2025Updated 10 months ago
- ☆24Dec 5, 2018Updated 7 years ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Feb 12, 2026Updated last month
- Threshold Indicator Taxa Analysis☆16Mar 3, 2026Updated 2 weeks ago
- Profiler for metagenomics based on NGLess☆13Feb 22, 2024Updated 2 years ago
- Bioinformatics program inStrain☆182Mar 12, 2026Updated last week
- ☆11Feb 9, 2024Updated 2 years ago
- Microbiome conferences and scientific meetings.☆29Feb 10, 2026Updated last month
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Mar 14, 2024Updated 2 years ago
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆11Oct 29, 2020Updated 5 years ago
- Minimal Microbial Consortia creation tools☆13Jan 28, 2022Updated 4 years ago
- Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities 2022☆13Jan 8, 2024Updated 2 years ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31May 25, 2021Updated 4 years ago
- ☆17Sep 10, 2024Updated last year
- MetaSNV, a metagenomic SNV calling pipeline.☆21Mar 25, 2022Updated 3 years ago
- ☆14Sep 2, 2021Updated 4 years ago
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated last year
- Raspir, the rare species identifier☆11Oct 19, 2023Updated 2 years ago
- ☆14Oct 14, 2023Updated 2 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆42Sep 3, 2024Updated last year
- Integrative virome pipeline☆13Nov 4, 2024Updated last year
- A hybrid assembly and MAG recovery pipeline (and more!)☆104Jan 27, 2026Updated last month
- alignment-free coverage calculation for metagenomic binning >100 times faster☆50Mar 13, 2025Updated last year
- gutSMASH☆58Oct 3, 2025Updated 5 months ago
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆36Mar 4, 2026Updated 2 weeks ago
- Kraken output generates a report for each datasets, this script takes these individual output and combines it to one file, where each col…☆23Jul 26, 2024Updated last year
- UTK Bioinformatics Applications☆11Nov 9, 2018Updated 7 years ago
- ☆11Apr 5, 2021Updated 4 years ago
- ☆50Jan 4, 2026Updated 2 months ago
- strain-level analysis tools☆39Oct 21, 2024Updated last year
- MetaCarvel: A scaffolder for metagenomes☆14Sep 17, 2024Updated last year
- ☆16Jun 18, 2020Updated 5 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆43Feb 17, 2023Updated 3 years ago
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆82Mar 12, 2026Updated last week
- A Shotgun Metagenome Annotation Pipeline☆24Mar 24, 2017Updated 8 years ago