EnvGen / POGENOMLinks
Population genomics from metagenomes
☆12Updated last year
Alternatives and similar repositories for POGENOM
Users that are interested in POGENOM are comparing it to the libraries listed below
Sorting:
- ☆26Updated 2 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Updated 3 years ago
- ☆14Updated 2 years ago
- ☆16Updated 8 months ago
- ☆20Updated 2 years ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆54Updated last year
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆25Updated last month
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated last year
- Prophage Activity Estimator☆30Updated last year
- Hydrocarbon biodegradation gene annotation☆18Updated 3 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Updated last year
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 8 months ago
- A Hierarchical Approach to Pangenomics Inference☆13Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- Automatic eukaryotic taxonomic classification☆29Updated 8 months ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆23Updated 2 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆45Updated 5 months ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Updated last year
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆28Updated 8 months ago
- ☆22Updated 3 years ago
- Bacterial GWAS analysis☆46Updated last week
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- ☆33Updated 2 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆43Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago