danielriosgarza / MAMBOLinks
☆11Updated 6 years ago
Alternatives and similar repositories for MAMBO
Users that are interested in MAMBO are comparing it to the libraries listed below
Sorting:
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated 3 months ago
- Python bindings for the TaxonKit library☆40Updated 2 months ago
- Protein Alignment and Detection Interface☆60Updated last year
- ☆23Updated 5 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 8 months ago
- ☆37Updated last year
- Robust Aitchison PCA from sparse count data☆36Updated 3 years ago
- Automatically exported from code.google.com/p/prank-msa☆28Updated 5 months ago
- The MG-RAST Backend -- the API server☆45Updated 2 years ago
- A package to annotate protein sequences☆59Updated 6 months ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated last year
- Metagenome analysis using the Kraken software suite☆33Updated 2 years ago
- ☆25Updated 4 years ago
- Database of genomes integrated from the gut microbiome and other environments☆44Updated 2 years ago
- Parse GFF3 into Pandas dataframes☆30Updated last year
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- PaperBLAST: find papers about a protein or its homologs☆45Updated 3 weeks ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆22Updated last year
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆64Updated 2 months ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 3 months ago
- A snakemake workflow for metagenomic projects☆14Updated 2 years ago
- SINA - Reference based multiple sequence alignment☆41Updated 4 years ago
- A versatile toolkit for k-mers with taxonomic information☆79Updated 3 weeks ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples☆34Updated 5 months ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆35Updated last year
- Bayesian Inferential Regression for Differential Microbiome Analysis☆22Updated last year
- Advanced metagenomic Sequence Analysis in R☆15Updated 7 years ago