danielriosgarza / MAMBOLinks
☆10Updated 6 years ago
Alternatives and similar repositories for MAMBO
Users that are interested in MAMBO are comparing it to the libraries listed below
Sorting:
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated 3 months ago
- PaperBLAST: find papers about a protein or its homologs☆51Updated 3 weeks ago
- ☆39Updated 2 years ago
- Database of genomes integrated from the gut microbiome and other environments☆45Updated 3 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆25Updated 3 weeks ago
- OPAL: Open-community Profiling Assessment tooL☆30Updated last month
- Protein Alignment and Detection Interface☆60Updated last year
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated 2 years ago
- Robust Aitchison PCA from sparse count data☆37Updated 3 years ago
- Metagenome analysis using the Kraken software suite☆36Updated 3 years ago
- Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples☆34Updated 10 months ago
- Python bindings for the TaxonKit library☆43Updated last week
- The Microbial Co-occurrence Network Explorer☆21Updated 2 years ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 3 months ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 3 years ago
- A comprehensive pipeline for short read metagenomic data☆24Updated 5 years ago
- ☆31Updated 4 years ago
- A package to annotate protein sequences☆61Updated 11 months ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 7 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆42Updated last year
- Bayesian Inferential Regression for Differential Microbiome Analysis☆23Updated 2 years ago
- ☆27Updated 2 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Updated 2 months ago
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆26Updated 2 years ago
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- ☆23Updated 6 years ago
- A snakemake workflow for metagenomic projects☆15Updated 2 years ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 6 months ago
- ☆25Updated 5 years ago
- ☆43Updated 8 months ago