danielriosgarza / MAMBOLinks
☆10Updated 6 years ago
Alternatives and similar repositories for MAMBO
Users that are interested in MAMBO are comparing it to the libraries listed below
Sorting:
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated last month
- ☆38Updated last year
- Protein Alignment and Detection Interface☆60Updated last year
- OPAL: Open-community Profiling Assessment tooL☆29Updated 10 months ago
- Database of genomes integrated from the gut microbiome and other environments☆44Updated 2 years ago
- Metagenome analysis using the Kraken software suite☆35Updated 3 years ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated last month
- Python bindings for the TaxonKit library☆41Updated last week
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆23Updated last year
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated 2 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- A package to annotate protein sequences☆60Updated 9 months ago
- Robust Aitchison PCA from sparse count data☆37Updated 3 years ago
- Detection of incorrectly labeled sequences across kingdoms☆86Updated 3 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆67Updated last week
- The Microbial Co-occurrence Network Explorer☆21Updated 2 years ago
- ☆31Updated 4 years ago
- Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples☆34Updated 8 months ago
- gutSMASH☆55Updated 2 months ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 7 years ago
- ☆27Updated last year
- Flash2 has some improvements from flash_1 including new logic from innie and outie overlaps as well as some initial steps for flash for a…☆50Updated 7 years ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆24Updated 4 months ago
- PaperBLAST: find papers about a protein or its homologs☆48Updated this week
- ☆25Updated 4 years ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆52Updated 3 weeks ago
- ☆41Updated 5 months ago
- A comprehensive pipeline for short read metagenomic data☆25Updated 5 years ago
- Parse GFF3 into Pandas dataframes☆30Updated last year
- Scalable creating/updating of metagenome profiling databases☆62Updated 5 months ago