☆10Jul 4, 2019Updated 6 years ago
Alternatives and similar repositories for MAMBO
Users that are interested in MAMBO are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Data-Driven Constraint-based analysis☆12Nov 4, 2022Updated 3 years ago
- Dynamic Flux Balance analysis in Python☆12Jan 22, 2016Updated 10 years ago
- microbiome data simulation package☆22Oct 2, 2025Updated 7 months ago
- Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models☆12Nov 28, 2023Updated 2 years ago
- Python package to study microbial communities using metabolic modeling.☆128Mar 31, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- agent based modelling☆37Aug 28, 2024Updated last year
- Efficient random sampling for COBRA models☆14Oct 14, 2021Updated 4 years ago
- Mass Action Stoichiometric Simulation (MASS) Toolbox☆12Aug 1, 2017Updated 8 years ago
- Scripts to build high-quality genome-scale metabolic model by using a deep neural network to guide gapfilling☆19Mar 18, 2025Updated last year
- Mackinac: A bridge between ModelSEED and COBRApy☆19Aug 20, 2018Updated 7 years ago
- Load bioinformatics datasets into a local database☆11Apr 8, 2025Updated last year
- From annotated genomes to metabolic screening in large scale microbiotas☆73Apr 27, 2026Updated 3 weeks ago
- Analysis of ensembles of metabolic network reconstructions☆22Updated this week
- Minimal Supplying Community Search with constraint-based optimization methods.☆16Apr 23, 2026Updated last month
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆15Jul 5, 2023Updated 2 years ago
- ☆27Dec 20, 2023Updated 2 years ago
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆213Updated this week
- A collection of functions compatible with the Opentrons API☆10Oct 28, 2022Updated 3 years ago
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 2 years ago
- ☆18Apr 6, 2022Updated 4 years ago
- The seqtime R package provides functions to analyse sequencing data time series and to simulate community dynamics☆20Dec 9, 2022Updated 3 years ago
- The aim of this repository is to maintain, refine, and expand the AGORA collection of genome-scale metabolic reconstructions for human gu…☆25Dec 10, 2020Updated 5 years ago
- Python package for building SBML models without needing to use libSBML.☆11Aug 18, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A Julia package for handle genome graph in the GFA format.☆11Sep 2, 2022Updated 3 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Feb 12, 2016Updated 10 years ago
- The Microbial Co-occurrence Network Explorer☆21Oct 17, 2023Updated 2 years ago
- Teaching materials for SymbNET course: from MAGs to GEMs☆14Jan 8, 2024Updated 2 years ago
- Source code for the software implementation of SeGraM proposed in our ISCA 2022 paper: Senol Cali et. al., "SeGraM: A Universal Hardware …☆12Nov 3, 2022Updated 3 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Nov 5, 2025Updated 6 months ago
- ☆26Aug 10, 2023Updated 2 years ago
- Predicting ncRNA-protein interaction using high-level features based on deep learning☆15May 2, 2020Updated 6 years ago
- C++ tools for NCBI taxonomy tasks☆12Jun 26, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Convert GFF, fastas, annotation table and species name into Genbank.☆17Jan 14, 2026Updated 4 months ago
- Provides easy access to Thermo Discoverer platform results☆20Apr 22, 2026Updated last month
- ☆10Dec 4, 2019Updated 6 years ago
- A Survey of Canteen Desserts at Institut Pasteur☆12Nov 18, 2022Updated 3 years ago
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆50Feb 5, 2026Updated 3 months ago
- A comprehensive and customizable R package for microbiome analysis.☆24Aug 10, 2025Updated 9 months ago
- Website for visualizing predicted drug side-effects using L1000 data (http://maayanlab.net/SEP-L1000/)☆10Apr 15, 2022Updated 4 years ago