spxuw / DKI
☆30Updated 6 months ago
Related projects: ⓘ
- dada2 formatted nifH database☆11Updated 4 months ago
- R scripts for performing co-occurrence analyses☆34Updated 9 years ago
- ☆21Updated 5 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆52Updated 3 weeks ago
- ☆19Updated last year
- functions for analyzing phyloseq data☆26Updated last month
- Tranform files to the microtable object in microeco package☆22Updated last week
- ☆18Updated last month
- ☆35Updated 6 years ago
- ☆23Updated 8 months ago
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆27Updated last month
- ☆67Updated 9 months ago
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆11Updated 2 years ago
- ☆36Updated this week
- A microbiome analysis toolkit for R☆18Updated last year
- Utilities for community ecology analysis☆17Updated 3 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆51Updated 2 weeks ago
- Repo for a Microbiome Protocol☆9Updated 6 years ago
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆42Updated last week
- SourceTracker2☆62Updated 2 months ago
- ☆8Updated 4 years ago
- ☆12Updated 2 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆29Updated 3 years ago
- Code for running analyses carried out in Stegen et al. 2013, ISME☆29Updated 6 years ago
- Dissimilarity Overlap Curve analysis☆11Updated last year
- ☆10Updated 7 months ago
- DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data☆35Updated 2 years ago
- Microbial co-occurrence network inferred from Earth Microbiome Project☆23Updated 4 years ago
- phyloseq R☆10Updated 5 years ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 10 months ago