spxuw / DKILinks
☆38Updated 10 months ago
Alternatives and similar repositories for DKI
Users that are interested in DKI are comparing it to the libraries listed below
Sorting:
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆55Updated 7 months ago
- SourceTracker2☆84Updated last year
- ☆78Updated 2 years ago
- Genome-informed, trait-based dynamic energy budget modeling of microbes with ML analysis of emergent strategies☆15Updated last month
- R scripts for performing co-occurrence analyses☆36Updated 11 years ago
- dada2 formatted nifH database☆13Updated last year
- ☆44Updated last year
- ☆22Updated 2 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data☆50Updated last year
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Updated 2 years ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆63Updated 2 months ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆123Updated this week
- ☆23Updated 6 years ago
- A synthesis of bacterial and archaeal phenotypic trait data☆35Updated 2 years ago
- Various functions for analysis of microbial community data☆47Updated 3 months ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆78Updated 6 months ago
- ☆28Updated 2 years ago
- ☆53Updated 5 years ago
- Microbial co-occurrence network inferred from Earth Microbiome Project☆26Updated 5 years ago
- A Port of SparCC by Yonatan Friedman to Python3☆17Updated 5 years ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆46Updated this week
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆34Updated 5 years ago
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆36Updated last week
- A microbiome analysis toolkit for R☆25Updated 2 years ago
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆91Updated 3 months ago
- Transform files to the microtable object with microeco package☆28Updated 2 months ago
- Vanilla regression methods for microbiome differential abundance analysis☆60Updated 5 years ago
- ☆35Updated 2 months ago
- REference Sequence annotation and CuRatIon Pipeline☆98Updated last week