☆39Mar 26, 2025Updated last year
Alternatives and similar repositories for DKI
Users that are interested in DKI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- dada2 formatted nifH database☆13May 17, 2024Updated 2 years ago
- Python package simulating artificial selection on microbial communities☆14Aug 15, 2023Updated 2 years ago
- Community detection method for multidimensional networks☆11Mar 3, 2025Updated last year
- mapping files for MetaCyc pathway☆13Sep 14, 2019Updated 6 years ago
- From annotated genomes to metabolic screening in large scale microbiotas☆74May 26, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Nov 21, 2018Updated 7 years ago
- ☆17Feb 3, 2023Updated 3 years ago
- Python interface for running COMETS simulations and analyzing the results☆16May 19, 2026Updated 3 weeks ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32May 22, 2020Updated 6 years ago
- A deep learning based approach to predict Antibiotic Resistance Genes (ARGs) from metagenomes. It provides two models,deepARG-SS and deep…☆59Apr 30, 2026Updated last month
- ☆51May 29, 2026Updated 2 weeks ago
- Network analysis for multi-omics☆115May 24, 2026Updated 3 weeks ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆227Mar 24, 2026Updated 2 months ago
- Metagenomics Workshop☆27Nov 23, 2016Updated 9 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆21Mar 15, 2023Updated 3 years ago
- Automated synthetic microbial Community Design☆13Mar 26, 2021Updated 5 years ago
- ☆27Dec 20, 2023Updated 2 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆75Dec 28, 2019Updated 6 years ago
- DAS Tool☆174May 2, 2024Updated 2 years ago
- Bioinformatics program inStrain☆188Mar 12, 2026Updated 3 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆46Feb 17, 2023Updated 3 years ago
- mLDM: a new hierarchical Bayesian statistical model for sparse microbial association discovery☆11Oct 18, 2016Updated 9 years ago
- ☆10Jul 4, 2019Updated 6 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A functional profiler for metagenomes using FracMinHash☆21Apr 20, 2026Updated last month
- Nature Communications | BASALT (Binning Across a Series of Assemblies Toolkit) for binning and refinement of short- and long-read sequenc…☆129May 28, 2026Updated 2 weeks ago
- COmpositional Zero-Inflated Network Estimation☆11Nov 20, 2023Updated 2 years ago
- StrainFinder☆30Jul 8, 2018Updated 7 years ago
- DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data☆51Mar 12, 2026Updated 3 months ago
- http://huttenhower.sph.harvard.edu/waafle☆24Jun 3, 2026Updated last week
- Pathway Tools multiprocessing wrapper (for PathoLogic).☆16Dec 18, 2025Updated 5 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆41Sep 17, 2025Updated 8 months ago
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆264May 13, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆77Mar 10, 2024Updated 2 years ago
- CyanoSeq: A curated cyanobacterial 16S rRNA database for next-generation sequencing☆16Oct 9, 2024Updated last year
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Apr 4, 2023Updated 3 years ago
- The Microbial Co-occurrence Network Explorer☆21Oct 17, 2023Updated 2 years ago
- microbiome data simulation package☆22Oct 2, 2025Updated 8 months ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆44Mar 26, 2024Updated 2 years ago
- Extended tools for correlation analysis and visualization.☆46Mar 19, 2020Updated 6 years ago