spxuw / DKILinks
☆38Updated 5 months ago
Alternatives and similar repositories for DKI
Users that are interested in DKI are comparing it to the libraries listed below
Sorting:
- dada2 formatted nifH database☆12Updated last year
- ☆77Updated last year
- SourceTracker2☆80Updated last year
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 3 months ago
- ☆21Updated 2 years ago
- R scripts for performing co-occurrence analyses☆34Updated 10 years ago
- Various functions for analysis of microbial community data☆45Updated 2 years ago
- Microbial co-occurrence network inferred from Earth Microbiome Project☆25Updated 5 years ago
- Statistics and visualization for amplicon data☆71Updated 2 years ago
- ☆40Updated last year
- ☆23Updated 6 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data☆47Updated 10 months ago
- A microbiome analysis toolkit for R☆24Updated 2 years ago
- A synthesis of bacterial and archaeal phenotypic trait data☆35Updated last year
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆119Updated last month
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated last month
- Fast expectation maximization for microbial source tracking☆129Updated last year
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆85Updated 7 months ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆45Updated 3 weeks ago
- ☆50Updated 4 years ago
- ☆12Updated 10 months ago
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆34Updated 3 weeks ago
- Sydney Phylogenetics Workshop☆66Updated 2 months ago
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆12Updated 3 years ago
- Rapid and scalable correlation estimation for compositional data☆92Updated last year
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆31Updated last year
- Code for running analyses carried out in Stegen et al. 2013, ISME☆30Updated 7 years ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆44Updated 2 weeks ago