☆17May 13, 2025Updated 11 months ago
Alternatives and similar repositories for SOCfinder
Users that are interested in SOCfinder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆104Jun 25, 2023Updated 2 years ago
- Pan-genome Analysis☆12May 4, 2025Updated 11 months ago
- scripts for microbiome analysis☆12Jul 25, 2024Updated last year
- A tool to detect RRNPP-type quorum sensing systems☆10Mar 24, 2023Updated 3 years ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Sep 24, 2024Updated last year
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Microbial Phenotype Prediction, successor to PICA, implemented with Python 3.7 and scikit-learn☆12Sep 10, 2021Updated 4 years ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆14Apr 4, 2026Updated 2 weeks ago
- 🦠🧬🧑💻📇 Microbial genomes-to-report pipeline☆75Mar 14, 2026Updated last month
- ☆15Oct 14, 2023Updated 2 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆50Mar 13, 2025Updated last year
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆11Oct 11, 2022Updated 3 years ago
- Python3 wrapper for parallelized gene prediction using Prodigal☆11Mar 3, 2023Updated 3 years ago
- ☆82Apr 10, 2026Updated last week
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Apr 29, 2021Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models☆12Nov 28, 2023Updated 2 years ago
- From annotated genomes to metabolic screening in large scale microbiotas☆71Mar 26, 2026Updated 3 weeks ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆42Feb 26, 2026Updated last month
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- KEGG Module Evaluation Tool☆33Mar 5, 2026Updated last month
- Bioinformatics tool for Locus Visualisation☆164Mar 30, 2026Updated 2 weeks ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆24Nov 2, 2025Updated 5 months ago
- CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification …☆12Mar 20, 2022Updated 4 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆35Dec 4, 2025Updated 4 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆48Jun 11, 2025Updated 10 months ago
- BEAV: Bacterial Element Annotation reVamped☆76Aug 21, 2025Updated 7 months ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆23Aug 14, 2025Updated 8 months ago
- ☆51Mar 29, 2026Updated 3 weeks ago
- geNomad: Identification of mobile genetic elements☆303Mar 29, 2026Updated 3 weeks ago
- ☆25Jun 20, 2023Updated 2 years ago
- Uncover organisms' metabolic blueprints☆16Jun 18, 2024Updated last year
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 4 years ago
- Fast tool to build the core genome of prokaryotic genomes. Can handle large datasets. Dependencis: Usearch & Numpy☆10Nov 26, 2025Updated 4 months ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Systematic search of all known anti-phage systems.☆152Apr 2, 2026Updated 2 weeks ago
- Virus Protein Family tools☆31Jul 20, 2022Updated 3 years ago
- COnstraint Based Reconstruction and EXascale Analysis (in Julia)☆18Sep 26, 2025Updated 6 months ago
- ☆51Apr 5, 2026Updated 2 weeks ago
- ☆93Mar 25, 2026Updated 3 weeks ago
- The BV-BRC Command Line Interface☆18Aug 6, 2025Updated 8 months ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Mar 14, 2024Updated 2 years ago