lauriebelch / SOCfinderLinks
☆16Updated 3 weeks ago
Alternatives and similar repositories for SOCfinder
Users that are interested in SOCfinder are comparing it to the libraries listed below
Sorting:
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆34Updated 3 years ago
- ☆25Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated 2 weeks ago
- Prophage Activity Estimator☆26Updated last year
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- ☆20Updated 3 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 7 months ago
- Population genomics from metagenomes☆11Updated 9 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated 11 months ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Updated last month
- ☆13Updated last year
- KEGG Module Evaluation Tool☆29Updated last year
- Unified Human Gut Virome Catalog☆31Updated 10 months ago
- Calculate assocations between genes and traits☆23Updated 2 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆30Updated 2 years ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆23Updated last month
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Updated last year
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆15Updated 2 years ago
- ☆16Updated 2 years ago
- ☆24Updated 6 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆41Updated 7 months ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated last month
- Classify metagenomic contigs as eukaryotic or prokaryotic☆35Updated 2 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 10 months ago
- Protocol for finding informative protein families and then using them to score omic samples☆18Updated 2 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- ☆32Updated last year
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- scripts for microbiome analysis☆11Updated 10 months ago