meringlab / FlashWeave.jl

Related projects: ⓘ

• jlw-ecoevo / gRodon2
  ☆38Updated last month
• statdivlab / radEmu
  ☆46Updated 2 weeks ago
• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆69Updated last year
• Chang-Yu-Chang / ecoprospector
  Python package simulating artificial selection on microbial communities
  ☆14Updated last year
• hildebra / lotus2
  Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
  ☆52Updated 3 weeks ago
• GenomicsAotearoa / metagenomics_summer_school
  Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber
  ☆51Updated 2 weeks ago
• pierrebarbera / epa-ng
  Massively parallel phylogenetic placement of genetic sequences
  ☆77Updated 2 years ago
• jlw-ecoevo / gRodon
  ☆17Updated last year
• eead-csic-compbio / metagenome_Pfam_score
  Protocol for finding informative protein families and then using them to score metagenomic sets.
  ☆9Updated 2 years ago
• AuReMe / metage2metabo
  From annotated genomes to metabolic screening in large scale microbiotas
  ☆50Updated 3 weeks ago
• GraceYoon / SPRING
  Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data
  ☆20Updated 2 years ago
• aomlomics / tourmaline
  Amplicon sequence processing workflow using QIIME 2 and Snakemake
  ☆42Updated this week
• metageni / SUPER-FOCUS
  A tool for agile functional analysis of shotgun metagenomic data
  ☆21Updated this week
• PedroMTQ / mantis
  A package to annotate protein sequences
  ☆53Updated 2 months ago
• sherrillmix / taxonomizr
  Parse NCBI taxonomy and accessions to find taxonomic assignments
  ☆69Updated 9 months ago
• umerijaz / microbiomeSeq
  An R package for microbial community analysis in an environmental context
  ☆66Updated 3 years ago
• knights-lab / SHOGUN
  SHallow shOtGUN profiler
  ☆54Updated 2 years ago
• ohlab / GRiD
  Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …
  ☆31Updated 4 years ago
• arumugamlab / msamtools
  Metagenomics-related extended functionalities to samtools
  ☆18Updated last year
• kelwyres / Bactabolize
  ☆34Updated 2 months ago
• raeslab / omixer-rpm
  A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.
  ☆25Updated 5 years ago
• blekhmanlab / biomehorizon
  Plot microbiome time series in parallel
  ☆23Updated 10 months ago
• ghoresh11 / twilight
  All scripts used for the analysis of the twilight of the pan-genome, and scripts available for others to apply similar analysis
  ☆13Updated 3 years ago
• microbma / earthnetwork
  Microbial co-occurrence network inferred from Earth Microbiome Project
  ☆23Updated 4 years ago
• xavierdidelot / BactDating
  Bayesian inference of ancestral dates on bacterial phylogenetic trees
  ☆81Updated 2 months ago
• lozuponelab / SCNIC
  Sparse Cooccurence Network Investigation for Compositional data
  ☆21Updated 2 weeks ago
• Gibbons-Lab / isb_course_2023
  Materials and presentation for the 2023 ISB Microbiome course.
  ☆20Updated 3 months ago
• snayfach / MGV
  Supporting code for uncultivated gut virus manuscript
  ☆64Updated last year
• schuyler-smith / phylosmith
  functions for analyzing phyloseq data
  ☆26Updated last month
• biocore / qurro
  Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples
  ☆31Updated last year