SMETANA: a tool to analyse interactions in microbial communities
☆67May 6, 2025Updated 10 months ago
Alternatives and similar repositories for smetana
Users that are interested in smetana are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Higher-Order Co-occurrence☆12Nov 9, 2021Updated 4 years ago
- CarveMe: genome-scale metabolic model reconstruction☆198Sep 12, 2025Updated 6 months ago
- Python package to study microbial communities using metabolic modeling.☆121Mar 11, 2026Updated 2 weeks ago
- Supplementary data for co-occurrence manuscript☆10Dec 19, 2019Updated 6 years ago
- agent based modelling☆35Aug 28, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆257Jul 27, 2024Updated last year
- From annotated genomes to metabolic screening in large scale microbiotas☆69Jan 16, 2026Updated 2 months ago
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆18Oct 21, 2022Updated 3 years ago
- ReFramed: metabolic modeling package☆63Sep 16, 2025Updated 6 months ago
- memote – the genome-scale metabolic model test suite☆145Aug 14, 2025Updated 7 months ago
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆30Mar 5, 2019Updated 7 years ago
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆18Mar 17, 2021Updated 5 years ago
- Dynamic FBA for use with COBRApy metabolic models☆10Sep 26, 2023Updated 2 years ago
- An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as…☆63Mar 13, 2026Updated 2 weeks ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆208Mar 5, 2026Updated 3 weeks ago
- Uncover organisms' metabolic blueprints☆13Jun 18, 2024Updated last year
- Teaching materials for SymbNET course: from MAGs to GEMs☆14Jan 8, 2024Updated 2 years ago
- EnDED is a program that aims to detect environmentally-driven ("indirect") edges in an association network.☆10Dec 1, 2023Updated 2 years ago
- The code and distributable for designing minimal microbial communities with specified metabolic functions.☆11Aug 9, 2017Updated 8 years ago
- Python package simulating artificial selection on microbial communities☆14Aug 15, 2023Updated 2 years ago
- Inference of microbial interaction networks from large-scale heterogeneous abundance data☆90Oct 9, 2025Updated 5 months ago
- ☆51Mar 20, 2026Updated last week
- Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models☆12Nov 28, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ☆24Oct 19, 2023Updated 2 years ago
- CBMPy is a Python based platform for constraint based modelling and analysis.☆20May 12, 2024Updated last year
- Python interface for running COMETS simulations and analyzing the results☆15Feb 24, 2026Updated last month
- Minimal Supplying Community Search with constraint-based optimization methods.☆16Jul 29, 2025Updated 7 months ago
- Enumerating biosynthetic pathways in metabolic networks☆13Feb 5, 2025Updated last year
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆11Oct 11, 2022Updated 3 years ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆220Jan 27, 2025Updated last year
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32May 22, 2020Updated 5 years ago
- ☆22Apr 3, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆16Mar 12, 2026Updated 2 weeks ago
- ☆11Apr 17, 2025Updated 11 months ago
- ☆46Jun 11, 2025Updated 9 months ago
- mergem is a python package and command-line tool for merging, comparing, and translating genome-scale metabolic models☆13Aug 20, 2025Updated 7 months ago
- ☆18Dec 11, 2024Updated last year
- ☆35Jan 21, 2026Updated 2 months ago
- COBRApy is a package for constraint-based modeling of metabolic networks.☆551Dec 4, 2025Updated 3 months ago