SMETANA: a tool to analyse interactions in microbial communities
☆74May 6, 2025Updated last year
Alternatives and similar repositories for smetana
Users that are interested in smetana are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Higher-Order Co-occurrence☆12Nov 9, 2021Updated 4 years ago
- CarveMe: genome-scale metabolic model reconstruction☆216Sep 12, 2025Updated 11 months ago
- Python package to study microbial communities using metabolic modeling.☆135Aug 11, 2026Updated last week
- Supplementary data for co-occurrence manuscript☆10Dec 19, 2019Updated 6 years ago
- agent based modelling☆39Aug 28, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆273May 13, 2026Updated 3 months ago
- From annotated genomes to metabolic screening in large scale microbiotas☆77Jul 27, 2026Updated 3 weeks ago
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆20Oct 21, 2022Updated 3 years ago
- ReFramed: metabolic modeling package☆64Jun 26, 2026Updated last month
- memote – the genome-scale metabolic model test suite☆151Aug 14, 2025Updated last year
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆33Mar 5, 2019Updated 7 years ago
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆19Mar 17, 2021Updated 5 years ago
- Dynamic FBA for use with COBRApy metabolic models☆10Sep 26, 2023Updated 2 years ago
- EnDED is a program that aims to detect environmentally-driven ("indirect") edges in an association network.☆10Dec 1, 2023Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as…☆70Updated this week
- Python package simulating artificial selection on microbial communities☆15Aug 15, 2023Updated 3 years ago
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆220Updated this week
- FLYCOP (FLexible sYnthetic Consortium OPtimization)☆12Sep 24, 2018Updated 7 years ago
- Teaching materials for SymbNET course: from MAGs to GEMs☆15Jan 8, 2024Updated 2 years ago
- The code and distributable for designing minimal microbial communities with specified metabolic functions.☆11Aug 9, 2017Updated 9 years ago
- Uncover organisms' metabolic blueprints