cdanielmachado / smetanaLinks
SMETANA: a tool to analyse interactions in microbial communities
☆64Updated 5 months ago
Alternatives and similar repositories for smetana
Users that are interested in smetana are comparing it to the libraries listed below
Sorting:
- Pipeline for metabolic annotation of microbial genomes☆150Updated 7 months ago
- Python package to study microbial communities using metabolic modeling.☆112Updated 3 weeks ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆78Updated 2 years ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆158Updated 4 months ago
- Bioinformatics program inStrain☆177Updated 5 months ago
- CarveMe: genome-scale metabolic model reconstruction☆187Updated last month
- Supporting code for uncultivated gut virus manuscript☆75Updated 2 years ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆80Updated 10 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆144Updated this week
- Materials and presentation for the 2023 ISB Microbiome course.☆24Updated last year
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆75Updated last year
- motus - a tool for marker gene-based OTU (mOTU) profiling☆161Updated last year
- From annotated genomes to metabolic screening in large scale microbiotas☆65Updated 5 months ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆73Updated 5 months ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆152Updated 6 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆257Updated 2 weeks ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆87Updated last year
- ARG normalization by mapping to the ARO ontology.☆59Updated 3 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆225Updated 2 weeks ago
- Bioinformatics tool for Locus Visualisation☆125Updated 5 months ago
- Convert GTDB taxonomy to NCBI taxdump format☆73Updated 2 years ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆78Updated last month
- Find clustered hits from a BLAST search☆123Updated last week
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆97Updated 2 years ago
- DAS Tool☆159Updated last year
- This repository contains all source code in the reconstructor python package, installation instructions, important file dependencies, and…☆23Updated this week
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆62Updated 4 years ago
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆97Updated 2 weeks ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆67Updated 3 weeks ago