Alternatives and similar repositories for smetana

Users that are interested in smetana are comparing it to the libraries listed below

• cruizperez / MicrobeAnnotator
  Pipeline for metabolic annotation of microbial genomes
  ☆150Updated 8 months ago
• biobakery / phylophlan
  Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
  ☆159Updated 5 months ago
• micom-dev / micom
  Python package to study microbial communities using metabolic modeling.
  ☆111Updated this week
• bjtully / BioData
  All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")
  ☆79Updated 2 years ago
• linnabrown / run_dbcan
  Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…
  ☆153Updated 6 months ago
• MrOlm / inStrain
  Bioinformatics program inStrain
  ☆178Updated 6 months ago
• motu-tool / mOTUs
  motus - a tool for marker gene-based OTU (mOTU) profiling
  ☆161Updated last year
• snayfach / MGV
  Supporting code for uncultivated gut virus manuscript
  ☆76Updated 2 years ago
• gamcil / cblaster
  Find clustered hits from a BLAST search
  ☆126Updated this week
• cdanielmachado / carveme
  CarveMe: genome-scale metabolic model reconstruction
  ☆187Updated 2 months ago
• AnantharamanLab / ViWrap
  A wrapper to identify, bin, classify, and predict host-viral relationship for viruses
  ☆81Updated 10 months ago
• AuReMe / metage2metabo
  From annotated genomes to metabolic screening in large scale microbiotas
  ☆66Updated 6 months ago
• Gibbons-Lab / isb_course_2023
  Materials and presentation for the 2023 ISB Microbiome course.
  ☆24Updated last year
• emmamglass / reconstructor
  This repository contains all source code in the reconstructor python package, installation instructions, important file dependencies, and…
  ☆23Updated this week
• gbouras13 / pharokka
  fast phage annotation program
  ☆184Updated last week
• bluenote-1577 / sylph
  ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.
  ☆262Updated last month
• AstrobioMike / bit
  Bioinformatics Tools
  ☆89Updated last month
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆124Updated 2 years ago
• cmks / DAS_Tool
  DAS Tool
  ☆162Updated last year
• patrickwest / EukRep
  Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets
  ☆75Updated last year
• moshi4 / COGclassifier
  A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
  ☆74Updated 6 months ago
• bluenote-1577 / skani
  Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.
  ☆226Updated last month
• chklovski / CheckM2
  Assessing the quality of metagenome-derived genome bins using machine learning
  ☆236Updated 8 months ago
• jotech / gapseq
  Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
  ☆191Updated this week
• robotoD / GenoVi
  GenoVi, an automated customizable circular genome visualizer for bacteria and archaea
  ☆98Updated 2 years ago
• medema-group / BiG-SCAPE
  Similarity networks of biosynthetic gene clusters
  ☆141Updated last month
• wwood / singlem
  Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes
  ☆170Updated this week
• gem-pasteur / macsyfinder
  MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.
  ☆70Updated last month
• Gibbons-Lab / pipelines
  Pipelines used in the lab.
  ☆14Updated 7 months ago
• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆85Updated 2 years ago