AliTVTeam / AliTVLinks
Visualize whole genome alignments as linear maps
☆73Updated 3 weeks ago
Alternatives and similar repositories for AliTV
Users that are interested in AliTV are comparing it to the libraries listed below
Sorting:
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆59Updated 4 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- Split Kmer Analysis☆65Updated 3 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated last month
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Conditional Reciprocal Best Blast☆41Updated 8 years ago
- orthology assignment using phylogenetic and network analyses☆45Updated 5 months ago
- ☆53Updated 4 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆53Updated 2 months ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 4 years ago
- reference-based long read assemblies of bacterial genomes☆50Updated 4 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- k-mer learning materials☆74Updated 6 months ago
- Filter SAM file for soft and hard clipped alignments☆53Updated last year
- Synteny Imager☆64Updated last month
- A tool for removing redundant genomes from a set of assemblies☆76Updated 2 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆61Updated last year
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆52Updated 3 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- Gene-flank analysis tool☆29Updated 8 months ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆62Updated 11 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 4 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 4 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago
- Flexible circular visualization of genome-associated data with BioPerl and SVG.☆47Updated 6 years ago