AliTVTeam / AliTVLinks
Visualize whole genome alignments as linear maps
☆73Updated 2 months ago
Alternatives and similar repositories for AliTV
Users that are interested in AliTV are comparing it to the libraries listed below
Sorting:
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated this week
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 4 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- ☆53Updated 4 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- Split Kmer Analysis☆65Updated 3 years ago
- Synteny Imager☆64Updated 3 months ago
- k-mer learning materials☆80Updated 8 months ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 11 months ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆64Updated 5 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- ☆33Updated 4 years ago
- Automatically exported from code.google.com/p/prottest3☆38Updated 7 years ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆46Updated 3 months ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 9 months ago
- Conditional Reciprocal Best Blast☆42Updated 8 years ago
- Gene-flank analysis tool☆33Updated 10 months ago
- ☆66Updated last month
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆65Updated 5 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆63Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago