moshi4 / plot_genome_align_figLinks
Plot genome alignment figure using progressiveMauve & genoPlotR
☆22Updated 3 years ago
Alternatives and similar repositories for plot_genome_align_fig
Users that are interested in plot_genome_align_fig are comparing it to the libraries listed below
Sorting:
- Finding regions of similarity between plasmids☆16Updated 3 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 5 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated last month
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆14Updated 3 weeks ago
- ZGA prokaryotic genome assembly and annotation pipeline☆13Updated last year
- ☆14Updated 4 years ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19Updated last year
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Updated last year
- Assort phage protein sequences into phamilies using MMseqs2☆11Updated 11 months ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆12Updated last year
- frame-shift correction for long-read (meta)genomics☆33Updated last year
- A pipeline for whole genome assembly☆16Updated 3 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- tool to determine optimal refrerence genome given a set of fasta files☆15Updated 2 years ago
- software to identify primers that can distinguish genomes☆20Updated 3 weeks ago
- A Nextflow pipeline for running synteny analysis.☆16Updated 5 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆11Updated 4 years ago
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆26Updated last year
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated last year
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Updated last year
- Parallel/Homoplasic SNP Finder☆21Updated 2 years ago
- A script for comparing old vs new versions of genome annotations☆22Updated 2 years ago
- Resolving Species Level Classification Using Emu☆14Updated last year
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 8 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year