moshi4 / plot_genome_align_figLinks
Plot genome alignment figure using progressiveMauve & genoPlotR
☆22Updated 3 years ago
Alternatives and similar repositories for plot_genome_align_fig
Users that are interested in plot_genome_align_fig are comparing it to the libraries listed below
Sorting:
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆12Updated last year
- Finding regions of similarity between plasmids☆16Updated 2 years ago
- ZGA prokaryotic genome assembly and annotation pipeline☆13Updated last year
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated last week
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆26Updated last year
- A pipeline for whole genome assembly☆16Updated 3 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 5 years ago
- A simple-to-use tool for visualizing and comparing genome contexts for numerous genomes☆17Updated last year
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Updated last year
- transposable element typing pipeline☆19Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- ☆14Updated 4 years ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆11Updated 4 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago
- software to identify primers that can distinguish genomes☆20Updated 9 months ago
- Genome size estimation from long read overlaps☆62Updated last month
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19Updated last year
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 7 months ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆13Updated last week
- tool to determine optimal refrerence genome given a set of fasta files☆15Updated 2 years ago
- Assort phage protein sequences into phamilies using MMseqs2☆11Updated 10 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆16Updated 2 years ago
- Read contamination removal☆25Updated last year
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Updated last year
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated last year
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- De novo VIral Genome Annotator☆23Updated last year