shenwei356 / easy_sbatchLinks
easy_sbatch - Batch submitting Slurm jobs with script templates
☆16Updated 3 years ago
Alternatives and similar repositories for easy_sbatch
Users that are interested in easy_sbatch are comparing it to the libraries listed below
Sorting:
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 2 weeks ago
- Teaching modules for Human Genome Variation Lab.☆20Updated 4 months ago
- Functions to compare a SV call sets against a truth set.☆30Updated 4 months ago
- ☆32Updated 2 years ago
- ☆15Updated 7 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 10 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated last year
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆10Updated 3 years ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- ☆20Updated last year
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Updated 2 years ago
- A pipeline creation tool using Snakemake☆11Updated last week
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 4 months ago
- Tools for merging Tandem Repeat VCF files☆35Updated 6 months ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆25Updated 4 months ago
- transposable element typing pipeline☆19Updated last year
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Updated 2 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Updated 2 months ago
- ☆17Updated 4 months ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆30Updated 11 months ago
- A software suite for accurate identification, annotation, translation, and feature characterization of annotate transcripts.☆19Updated 4 years ago
- Extracts subgraphs or components from a graph in GFA format☆25Updated 11 months ago
- ☆11Updated 4 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- CLI to automate Nextflow pipeline testing☆12Updated last month
- Implementation of ToL genome assembly workflows☆23Updated last week