Alternatives and similar repositories for easy_sbatch

Users that are interested in easy_sbatch are comparing it to the libraries listed below

• aesheppard / TETyper
  transposable element typing pipeline
  ☆18Updated last year
• EGTortuero / viga
  De novo VIral Genome Annotator
  ☆21Updated 9 months ago
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆33Updated this week
• DaehwanKimLab / seqwho
  SeqWho - A reliable and rapid FASTQ(A) file classifier
  ☆11Updated 3 years ago
• TravisWheelerLab / BATH
  Better Alignments with Translated HMMER
  ☆21Updated last week
• maxibor / sam2lca
  Lowest Common Ancestor from a SAM/BAM/CRAM alignment file
  ☆9Updated 10 months ago
• photocyte / plot_mitochondrial_genome_with_CIRCOS
  ☆15Updated 7 years ago
• mccoy-lab / hgv_modules
  Teaching modules for Human Genome Variation Lab.
  ☆20Updated 2 weeks ago
• quwubin / paired-kmers
  finding conserved regions in highly diverse genomes
  ☆15Updated 3 weeks ago
• Adamtaranto / blast-besties
  Rapid discovery of reciprocal best blast pairs.
  ☆10Updated 7 months ago
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆30Updated 2 months ago
• moshi4 / plot_genome_align_fig
  Plot genome alignment figure using progressiveMauve & genoPlotR
  ☆22Updated 2 years ago
• mahulchak / mscaffolder
  A comparative genome scaffolding tool
  ☆17Updated 6 years ago
• AnWiercze / NanopoReaTA
  Nanopore Real-Time Analysis Tool
  ☆15Updated 9 months ago
• uclahs-cds / tool-NFTest
  CLI to automate Nextflow pipeline testing
  ☆12Updated this week
• gf777 / mitoVGP
  The Vertebrate Genomes Project Mitogenome Assembly Pipeline
  ☆18Updated 2 years ago
• kevsilva / StrainFLAIR
  Strain-level abundances estimation in metagenomic samples using variation graphs
  ☆25Updated 2 years ago
• CMU-SAFARI / FastRemap
  FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…
  ☆26Updated 2 years ago
• nterhoeven / blast2bed
  convert a blast output to a bed file
  ☆12Updated 10 years ago
• alevar / tiebrush
  Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)
  ☆17Updated 2 weeks ago
• nf-core / kmermaid
  k-mer similarity analysis pipeline
  ☆21Updated 3 weeks ago
• SR-Martin / alvis
  ☆20Updated last year
• luntergroup / bamsplit
  Split a BAM file by haplotype support
  ☆16Updated 7 years ago
• ProwlerForNanopore / ProwlerTrimmer
  Trimming tool for Oxford Nanopore sequence data
  ☆21Updated 4 years ago
• kocherlab / pipemake
  A pipeline creation tool using Snakemake
  ☆11Updated last week
• splicebox / PsiCLASS
  Simultaneous multi-sample transcript assembler for RNA-seq data
  ☆17Updated 6 months ago
• Eco-Flow / synteny
  A Nextflow pipeline for running synteny analysis.
  ☆15Updated last week
• SwingOlive / kASA
  kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding
  ☆23Updated last year
• iqbal-lab-org / varifier
  Variant call verification
  ☆16Updated last month
• DessimozLab / OMAnnotator
  Consensus genome annotation using OMA
  ☆24Updated this week