easy_sbatch - Batch submitting Slurm jobs with script templates
☆16Dec 28, 2021Updated 4 years ago
Alternatives and similar repositories for easy_sbatch
Users that are interested in easy_sbatch are comparing it to the libraries listed below
Sorting:
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Aug 5, 2022Updated 3 years ago
- Simulate mutations in genomes☆15Jun 15, 2020Updated 5 years ago
- A simple fastp-MultiQC nextflow pipeline☆12Feb 2, 2023Updated 3 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated last year
- ☆10Feb 25, 2024Updated 2 years ago
- ☆15Nov 28, 2022Updated 3 years ago
- Code repository for the T2T-Y paper☆24Jul 11, 2023Updated 2 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆25Nov 19, 2025Updated 3 months ago
- Toy files and training material to introduce Linux to molecular biologists☆22Jul 21, 2023Updated 2 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Updated this week
- Viroid-like circRNA discovery and analysis suite☆19Nov 11, 2023Updated 2 years ago
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 4 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- Pipelines for Drosophila genome assembly and analysis☆16May 15, 2022Updated 3 years ago
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 3 years ago
- In this study, we perform systematic comparative analysis of seven widely-used SNV-calling methods, including SAMtools, the GATK Best Pra…☆16Oct 16, 2019Updated 6 years ago
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 2 years ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Jan 17, 2023Updated 3 years ago
- Bioinformatics scripts for genome analysis☆17Oct 26, 2022Updated 3 years ago
- finding conserved regions in highly diverse genomes☆16Jun 1, 2025Updated 9 months ago
- Structural variant caller for low-depth long-read sequencing data☆47Feb 5, 2026Updated 3 weeks ago
- Submit slurm sbatch jobs without a script☆73Aug 7, 2025Updated 6 months ago
- Making bioinformatics fun again☆74Dec 5, 2025Updated 2 months ago
- Bedfile perturbation tool☆17Sep 29, 2025Updated 5 months ago
- ☆24Nov 9, 2017Updated 8 years ago
- bioinformatics learning☆13Oct 10, 2023Updated 2 years ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- Repository☆10Oct 23, 2024Updated last year
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆62Updated this week
- A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read technologies☆38May 25, 2023Updated 2 years ago
- A collection of python and bash scripts for various bioinformatics-related tasks☆12Sep 19, 2024Updated last year
- ☆10Jan 30, 2020Updated 6 years ago
- ☆10Dec 2, 2025Updated 3 months ago
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 8 years ago
- Westlake BioBank for Chinese pilot project☆10May 17, 2023Updated 2 years ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Updated this week
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 2 years ago
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated 6 months ago