univieCUBE / gepardLinks
Genome Pair Rapid Dotter
☆67Updated 3 years ago
Alternatives and similar repositories for gepard
Users that are interested in gepard are comparing it to the libraries listed below
Sorting:
- ☆63Updated last week
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- finshingTool☆54Updated 8 years ago
- ☆44Updated 8 years ago
- ☆76Updated 5 years ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- TGS scaffolding☆46Updated 3 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Call select base modifications in PacBio HiFi reads☆8Updated 5 months ago
- A local-haplotagging-based small and structural variant caller☆78Updated 2 months ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆67Updated 2 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 8 months ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- ☆32Updated 4 years ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆80Updated 7 months ago
- Miscellaneous scripts for applications of PacBio systems☆27Updated 3 years ago
- A tool for evaluate long-read de novo assembly results☆48Updated 10 months ago
- Show pangenome graphs in an easy way☆56Updated 2 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆100Updated 4 years ago
- Simple pileup-based variant caller☆91Updated 2 months ago
- Large genome reassembly based on Hi-C data, continuation of GRAAL☆41Updated last year
- Python wrappers for programs that search for transposable elements☆19Updated 9 years ago
- SRF: Satellite Repeat Finder☆96Updated last year
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆57Updated 2 years ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆102Updated last week
- Pipeline to convert a haploid assembly into diploid☆100Updated 5 months ago
- MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆71Updated 3 months ago