PacificBiosciences / bam2fastxLinks
Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.
☆39Updated 2 years ago
Alternatives and similar repositories for bam2fastx
Users that are interested in bam2fastx are comparing it to the libraries listed below
Sorting:
- Structural variant caller☆55Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 11 months ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- Making diploid assembly becomes common practice for genomic study☆30Updated 8 years ago
- ☆28Updated 3 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 9 months ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- Genome Annotation Without Nightmares☆46Updated 10 months ago
- perSVade: personalized Structural Variation detection☆40Updated 2 months ago
- A battery of methylation tools for PacBio HiFi reads☆44Updated 3 weeks ago
- Structural variant merging tool☆55Updated last year
- Hitting associations with k-mers☆44Updated 3 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆21Updated 3 years ago
- SV genotyping with long reads☆40Updated 2 years ago
- A simple tool to calculate reads number and total base count in FASTQ file☆21Updated 6 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Updated 2 years ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆49Updated last week
- ☆36Updated last year
- ☆31Updated 6 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 2 weeks ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- ☆43Updated last year
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 7 years ago
- Transposable element polymorphism identification☆34Updated 5 years ago