cinquin / MEMELinks
MEME motif-based sequence analysis tools (http://meme-suite.org), with FreeBSD tweaks
☆15Updated 8 years ago
Alternatives and similar repositories for MEME
Users that are interested in MEME are comparing it to the libraries listed below
Sorting:
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year
- A python package for showing JBrowse views☆26Updated 2 years ago
- ☆17Updated 5 months ago
- Scoring GT/AG sites for improving spliced alignment☆49Updated 2 months ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆17Updated 8 months ago
- read, parse and operate different multiple input file formats with OpenVariant☆14Updated 2 months ago
- Long RNA-seq analysis workflow☆21Updated 3 months ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆59Updated 11 months ago
- Blazing fast toolkit to work with .hic and .cool files☆42Updated last week
- ☆38Updated last year
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- ☆38Updated 2 years ago
- Two pass alignment for long reads☆22Updated 4 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 4 years ago
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆37Updated last month
- Metagenomics microbial abundance quantification☆28Updated 3 years ago
- alternative splicing analysis pipeline☆20Updated 4 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆36Updated 6 years ago
- Long read to rMATS☆32Updated 2 years ago
- 🤖 Open‑source deep-learning-based splice‑site predictor that decodes splicing patterns across species☆32Updated last month
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆21Updated last month
- isoCirc☆10Updated 2 years ago
- Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis☆24Updated last month
- A script to make downloading of SRA/GEO data easier☆33Updated 2 years ago
- A tool for projecting genomic alignments to transcriptomic coordinates☆37Updated last year
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated 5 months ago
- Variant-aware CRISPR off-target nomination☆24Updated 2 weeks ago
- Automatically design multiplex PCR primer pairs for diverse templates☆31Updated last year
- Open Human Genome Library☆56Updated last month