Alternatives and similar repositories for MEME

Users that are interested in MEME are comparing it to the libraries listed below

• alevar / ORFanage
  Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…
  ☆28Updated 3 weeks ago
• paulsengroup / hictk
  Blazing fast toolkit to work with .hic and .cool files
  ☆29Updated last week
• TrinityCTAT / CTAT-VirusIntegrationFinder
  ☆16Updated last year
• s-andrews / sradownloader
  A script to make downloading of SRA/GEO data easier
  ☆30Updated last year
• bbglab / openvariant
  Read, parse and operate different multiple input file formats with OpenVariant
  ☆12Updated last week
• Gregor-Mendel-Institute / bookend
  End-guided RNA assembler
  ☆15Updated last month
• aakechin / cutPrimers
  curPrimers is a tool for trimming primer sequences from amplicon based NGS reads
  ☆16Updated last week
• jfjlaros / demultiplex
  Versatile FASTA/FASTQ demultiplexer.
  ☆33Updated last year
• matsengrp / phippery
  ☆18Updated 6 months ago
• bartongroup / 2passtools
  Two pass alignment for long reads
  ☆22Updated 4 years ago
• seqcode / allo
  Allo: a multi-mapped read rescue strategy for gene regulatory analyses
  ☆24Updated 9 months ago
• splicebox / MntJULiP
  Comprehensive and scalable differential splicing analyses
  ☆17Updated 2 months ago
• vpc-ccg / freddie
  Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing
  ☆16Updated 2 years ago
• srbehera / DRAGEN_Analysis
  ☆32Updated last year
• Xinglab / isoCirc
  isoCirc
  ☆10Updated last year
• CraigIDent / SpliSER
  Bioinformatic tool for Splice site Strength Estimation using RNA-seq
  ☆16Updated last week
• matsengrp / phip-flow
  A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets
  ☆12Updated 3 months ago
• XiDsLab / TAGET
  ☆19Updated 2 years ago
• comprna / R2Dtool
  Analyse RNA feature distributions.
  ☆16Updated 5 months ago
• gagneurlab / splicemap
  ☆20Updated 7 months ago
• KevinKuchinski / ProbeTools
  Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa
  ☆24Updated 2 years ago
• HKU-BAL / Clair3-RNA
  Clair3-RNA - a long-read small variant caller for RNA sequencing data
  ☆23Updated last month
• zsq-berry / 3D-genome-tools
  ☆12Updated 2 years ago
• ulelab / ultraplex
  Ultra-fast 5' and 3' demultiplexer
  ☆27Updated last year
• gsneha26 / urWGS
  Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5
  ☆20Updated 11 months ago
• Xinglab / lr2rmats
  Long read to rMATS
  ☆31Updated 2 years ago
• sims-lab / CapCruncher
  Analysis tool for NG-Capture-C, Tri-C and Tiled-C data
  ☆9Updated this week
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆36Updated last week
• multiz / multiz
  DNA multiple sequence aligner, official version from Penn State's Miller Lab
  ☆33Updated 6 years ago
• awjga / PORE-cupine
  First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing
  ☆14Updated last year