TheJacksonLaboratory / JAX-CNVLinks
Official code repository for JAX-CNV
☆12Updated 5 years ago
Alternatives and similar repositories for JAX-CNV
Users that are interested in JAX-CNV are comparing it to the libraries listed below
Sorting:
- Structural variant (SV) analysis tools☆36Updated last year
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆16Updated 3 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- ☆20Updated last year
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Structural Variation breakpoint discovery via adaptive learning☆15Updated 2 years ago
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆23Updated this week
- BAMixChecker: A fast and efficient tool for sample matching checkup☆14Updated 3 years ago
- Ultra-fast, high-performing structural variation (SV) detector☆23Updated 2 years ago
- CNV Rapid Aberration Detection And Reporting☆12Updated 4 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 4 months ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated last year
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆12Updated 5 years ago
- ☆16Updated 6 months ago
- ☆13Updated last year
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- ☆12Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated 2 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- This is the Haplotypo repository☆20Updated last year
- ☆21Updated this week
- Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5☆19Updated last year
- Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS data☆14Updated 6 months ago
- Sample Contamination Estimate from VCF☆20Updated 8 months ago