A 10x faster version base on official trimmomatic. The results of trimmomatic-pigz are exactly the same with official trimmomatic.
☆16Nov 20, 2024Updated last year
Alternatives and similar repositories for Trimmomatic-pigz
Users that are interested in Trimmomatic-pigz are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An Fast variant calling tool to detection germline and somatic variants☆12Feb 21, 2026Updated last month
- RNA mapping pipeline☆18Jun 3, 2018Updated 7 years ago
- Basic, no assumptions, multi-pileup☆24Mar 26, 2014Updated 12 years ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Aug 8, 2018Updated 7 years ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data☆31Feb 7, 2026Updated 2 months ago
- Staden Package "io_lib" (sometimes referred to as libstaden-read by distributions). This contains code for reading and writing a varie…☆40Mar 30, 2026Updated 2 weeks ago
- ☆32Dec 16, 2022Updated 3 years ago
- SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the mos…☆69Sep 5, 2019Updated 6 years ago
- BigWig manpulation tools using libBigWig and htslib☆30Aug 8, 2024Updated last year
- BitMapperBS: a fast and accurate read aligner for whole-genome bisulfite sequencing☆31Sep 15, 2019Updated 6 years ago
- Portable Crystal binary distributions for Linux on x86_64☆15Mar 22, 2021Updated 5 years ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Mar 6, 2023Updated 3 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Dec 16, 2019Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Official code repository for JAX-CNV☆14Jan 16, 2020Updated 6 years ago
- ☆32Aug 2, 2022Updated 3 years ago
- Read CRAM v3 and v2 in node or in the browser☆18Mar 28, 2026Updated 3 weeks ago
- Extremely fast Variant Call Format annotation☆11Dec 25, 2024Updated last year
- A k-mer frequency statistics software☆15Nov 19, 2021Updated 4 years ago
- Building the constrained coding regions (CCR) model☆16Dec 19, 2018Updated 7 years ago
- HIVDB Genotypic Resistance Interpretation Program☆21Mar 27, 2026Updated 3 weeks ago
- MrMosaic (Genomic Mosaic Structural Variant Caller)☆15Jul 21, 2017Updated 8 years ago
- A Pedantic FASTA Parser and Tool Set☆14Apr 22, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This repo is deprecated. Please use gfatools instead.☆15Aug 17, 2018Updated 7 years ago
- Kraken2 Server☆23Nov 24, 2025Updated 4 months ago
- Test of parallel compression acceleration☆16Sep 8, 2024Updated last year
- ☆14May 12, 2023Updated 2 years ago
- A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.☆53Apr 4, 2026Updated 2 weeks ago
- A high-performance search engine for large-scale genomic interval datasets☆20Sep 1, 2021Updated 4 years ago
- A tool to find and visualize rearrangements in DNA sequences☆16Sep 16, 2019Updated 6 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 4 months ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Mar 6, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Multiplex PCR design, in silico☆20Mar 4, 2025Updated last year
- Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.☆19Aug 9, 2023Updated 2 years ago
- NGS duplicate marking☆19Apr 6, 2021Updated 5 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Aug 27, 2019Updated 6 years ago
- ☆20Nov 30, 2023Updated 2 years ago
- bedtools-like functionality for interval sets in rust☆55Aug 5, 2025Updated 8 months ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated this week