brentp / excordLinks
extract SV signal from a BAM
☆11Updated 7 years ago
Alternatives and similar repositories for excord
Users that are interested in excord are comparing it to the libraries listed below
Sorting:
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last week
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Reducing reference bias using multiple population reference genomes☆33Updated last year
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.☆21Updated 6 years ago
- ☆11Updated 7 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- ☆23Updated 3 months ago
- ☆29Updated 4 years ago
- Ultra-efficient mapping-free structural variation genotyper☆19Updated 4 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated 3 weeks ago
- ☆11Updated 2 years ago
- Population-wide Deletion Calling☆35Updated 5 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- ☆21Updated last month
- Hemang Parikh☆11Updated 9 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 7 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Mapping-free variant caller for short-read Illumina data☆19Updated 5 years ago
- Pan gGnome Viewer☆10Updated 2 months ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated last month
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago