brentp / excord
extract SV signal from a BAM
☆11Updated 6 years ago
Alternatives and similar repositories for excord:
Users that are interested in excord are comparing it to the libraries listed below
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆28Updated 8 months ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- PopSTR - A Population based microsatellite genotyper☆32Updated last year
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 8 years ago
- Simplify snpEff annotations for interesting cases☆21Updated 6 years ago
- Hemang Parikh☆11Updated 9 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Python package and routines for merging VCF files☆29Updated 3 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- Structural Variation breakpoint discovery via adaptive learning☆15Updated last year
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆27Updated 9 months ago
- v2.x of the microassembly based somatic variant caller☆20Updated this week
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Prioritize structural variants based on CADD scores☆29Updated 4 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 7 years ago
- ☆21Updated last week
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 5 years ago
- Functions to compare a SV call sets against a truth set.☆29Updated 10 months ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated 2 weeks ago
- Mapping-free variant caller for short-read Illumina data☆19Updated 4 years ago
- Structural variant pipeline☆17Updated 4 years ago
- ☆11Updated 6 years ago
- Computes various SV statistics☆14Updated last year
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- ☆23Updated 5 years ago