extract SV signal from a BAM
☆11Jul 26, 2018Updated 7 years ago
Alternatives and similar repositories for excord
Users that are interested in excord are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Structural Variant Index☆76Dec 13, 2024Updated last year
- ☆15Jan 19, 2018Updated 8 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Jan 10, 2017Updated 9 years ago
- sort genomic data☆36Nov 7, 2025Updated 5 months ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 4 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Computes various SV statistics☆14Oct 12, 2023Updated 2 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Jan 28, 2026Updated 2 months ago
- Pan gGnome Viewer☆10Jul 10, 2025Updated 9 months ago
- Gene lists related to cancer immunotherapy☆14Sep 11, 2024Updated last year
- paplot creates various dynamic and interactive reports for cancer genome analysis.☆26Feb 1, 2023Updated 3 years ago
- Merging, Annotation, Validation, and Illustration of Structural variants☆76Aug 22, 2023Updated 2 years ago
- A Variant Call Format reader for Python.☆75Apr 19, 2015Updated 10 years ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Mar 6, 2023Updated 3 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Apr 9, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆19Mar 14, 2022Updated 4 years ago
- Utility programs to trim or sort Illumina reads with adapter sequences☆15Jul 23, 2013Updated 12 years ago
- vcf file manipulation☆22Jul 9, 2015Updated 10 years ago
- A tutorial for learning de novo assembly☆33Dec 8, 2011Updated 14 years ago
- genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF☆147Feb 17, 2026Updated 2 months ago
- Predicting oncogenic potential of gene fusions☆13Feb 13, 2016Updated 10 years ago
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.☆11Jul 7, 2017Updated 8 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Dec 14, 2020Updated 5 years ago
- Rails application for storing and parsing clinical exome VCF files. Gene annotations can be retrieved via Biomart integration from Ensemb…☆10May 7, 2017Updated 8 years ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- VAPr: A Python package for NoSQL variant data storage, annotation and prioritization☆37Jun 30, 2021Updated 4 years ago
- a pileup library that embraces the huge☆43Oct 2, 2020Updated 5 years ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆282May 21, 2025Updated 10 months ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆38Jul 30, 2020Updated 5 years ago
- ☆21Apr 10, 2026Updated last week
- DNN-based small variant caller☆12May 2, 2022Updated 3 years ago
- ☆29Feb 17, 2021Updated 5 years ago
- genetic variant expressions, annotation, and filtering for great good.☆274Dec 15, 2025Updated 4 months ago
- Data management of large-scale whole-genome sequence variant calls using GDS files (Development version only)☆46Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆45Dec 17, 2025Updated 4 months ago
- Interval data structure☆236Mar 18, 2026Updated last month
- GenoTypes Compressor☆16May 19, 2022Updated 3 years ago
- ☆36Aug 13, 2020Updated 5 years ago
- Reference-based compression of SRA data☆37Mar 26, 2013Updated 13 years ago
- A protocol to estimate global ancestry starting from raw Illumina data☆11Oct 16, 2019Updated 6 years ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Sep 26, 2016Updated 9 years ago