Alternatives and similar repositories for NASQAR

Users that are interested in NASQAR are comparing it to the libraries listed below

• datapplab / pathview
  pathway based data integration and visualization
  ☆41Updated 3 months ago
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆32Updated 3 weeks ago
• JhuangLab / iseq
  An integrated analysis toolkit and pipeline for Next-Generation Sequencing (NGS) panel sequencing data
  ☆14Updated 6 years ago
• NourMarzouka / multiclassPairs
  Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.
  ☆12Updated 2 years ago
• chess-genome / chess
  Comprehensive Human Expressed SequenceS
  ☆17Updated this week
• hase62 / Neoantimon
  Published at Bioinformatics
  ☆12Updated last year
• gzhmat / ShinyCNV
  a Shiny/R application to view and annotate copy number variations
  ☆28Updated 2 years ago
• JD2112 / methylr
  methylR: a single shiny solution from sequencer data to pathway analysis
  ☆12Updated 8 months ago
• saezlab / flop
  FunctionaL Omics Processing platform
  ☆13Updated 11 months ago
• dwgoon / nezzle
  Network Visualization using both GUI and Programming
  ☆28Updated last month
• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 6 years ago
• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆37Updated this week
• jsalignon / cactus
  Chromatin ACcessibility and Transcriptomics Unifying Software
  ☆16Updated 8 months ago
• jokergoo / KeywordsEnrichment
  ☆32Updated last year
• datapplab / SBGNview
  ☆27Updated 2 years ago
• Oshlack / MINTIE
  Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
  ☆35Updated last year
• salbrec / seqQscorer
  ☆22Updated 2 months ago
• SchlossLab / Sze_Obesity_mBio_2016
  ☆12Updated 7 years ago
• dongxuemin666 / RNA-combine
  RNA-seq data comprehensive data analysis toolbox
  ☆19Updated 2 years ago
• vanallenlab / retained-intron-neoantigen-pipeline
  Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.
  ☆28Updated 4 years ago
• icbi-lab / NeoFuse
  NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.
  ☆19Updated 2 years ago
• SimoneTiberi / BANDITS
  BANDITS: Bayesian ANalysis of DIfferenTial Splicing
  ☆18Updated last year
• jfjlaros / demultiplex
  Versatile FASTA/FASTQ demultiplexer.
  ☆33Updated last year
• griffithlab / genviz.org
  Genomic data interpretation and visualization Workshop
  ☆21Updated last month
• snakemake-workflows / dna-seq-neoantigen-prediction
  Snakemake workflow for neoantigen prediction
  ☆14Updated last year
• statgen / fivex
  Interactive eQTL visualizations
  ☆13Updated 2 years ago
• AlexsLemonade / scpca-nf
  scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data
  ☆14Updated last week
• morrislab / pairtree
  Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…
  ☆37Updated last year
• mani2012 / BatchQC
  Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.
  ☆35Updated last year
• rnakato / DROMPAplus
  ChIP-seq pipeline tool for quality check, normalization, statistical analysis, and visualization of multiple ChIP-seq samples.
  ☆24Updated last week