Griffan / FASTQuickLinks
Ultra Fast NGS Data QC Tool
☆28Updated 4 years ago
Alternatives and similar repositories for FASTQuick
Users that are interested in FASTQuick are comparing it to the libraries listed below
Sorting:
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 4 months ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 weeks ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Mapping-free variant caller for short-read Illumina data☆20Updated 5 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 4 years ago
- Identifying, understanding, and correcting technical biases on the sex chromosomes in next-generation sequencing data☆23Updated 6 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated 2 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- Mapping-free software for fishing relevant reads in an RNA-Seq sample☆19Updated 4 years ago
- full taxonomer cython repository☆22Updated 5 years ago
- ☆11Updated 2 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Adapters for trimming☆30Updated 6 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 7 years ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Updated 4 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 2 months ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆34Updated 3 years ago
- ☆23Updated 2 months ago
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 7 years ago
- Population-wide Deletion Calling☆35Updated 7 months ago