Griffan / FASTQuickLinks
Ultra Fast NGS Data QC Tool
☆27Updated 4 years ago
Alternatives and similar repositories for FASTQuick
Users that are interested in FASTQuick are comparing it to the libraries listed below
Sorting:
- Reducing reference bias using multiple population reference genomes☆32Updated last year
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 4 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 5 months ago
- v2.x of the microassembly based somatic variant caller☆24Updated last month
- Exploration of controlled loss of quality values for compressing CRAM files☆35Updated 2 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- ☆11Updated 2 years ago
- Population-wide Deletion Calling☆35Updated 3 months ago
- Functions to compare a SV call sets against a truth set.☆30Updated 3 weeks ago
- full taxonomer cython repository☆22Updated 5 years ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Updated 3 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 6 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Immuological gene typing and annotation for genome assembly☆37Updated 4 months ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- The shiny app that accompanies the ngsReports R package☆14Updated 4 years ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Mapping-free variant caller for short-read Illumina data☆19Updated 5 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- ☆21Updated 3 months ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- ☆20Updated last year