vgteam / gsswLinks
efficient alignment of strings to partially ordered string graphs
☆33Updated 3 years ago
Alternatives and similar repositories for gssw
Users that are interested in gssw are comparing it to the libraries listed below
Sorting:
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- ☆34Updated 5 years ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50Updated last year
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆43Updated 2 months ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Updated 7 years ago
- REINDEER REad Index for abuNDancE quERy☆57Updated last month
- Exploration of controlled loss of quality values for compressing CRAM files☆35Updated 2 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 5 years ago
- ☆28Updated 4 months ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- Tumour-only somatic mutation calling using long reads☆27Updated 9 months ago
- Lift-over alignments from variant-aware references☆35Updated 2 years ago
- Population-wide Deletion Calling☆35Updated 4 months ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- ☆21Updated 5 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated 2 years ago
- Graph based multi genome aligner☆47Updated 3 years ago
- ☆48Updated last year
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Parallel Sequence to Graph Alignment☆37Updated 2 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated last month