vgteam / gsswLinks
efficient alignment of strings to partially ordered string graphs
☆33Updated 3 years ago
Alternatives and similar repositories for gssw
Users that are interested in gssw are comparing it to the libraries listed below
Sorting:
- de Bruijn Graph-based read aligner☆34Updated 7 years ago
- ☆35Updated 5 years ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Updated 7 years ago
- Small general purpose library for C and Python with focus on bioinformatics.☆31Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 4 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 2 months ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆36Updated 2 years ago
- A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome.☆14Updated 9 years ago
- A streaming method for mapping nanopore raw signals☆32Updated 4 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 5 years ago
- Parallel Sequence to Graph Alignment☆36Updated 2 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆46Updated 2 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆32Updated 3 weeks ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 4 months ago
- Comprehensive alignment, whole-genome coverage, and capture coverage statistics.☆19Updated 11 months ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆49Updated 7 years ago
- ☆46Updated 5 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- ☆21Updated 6 years ago