atks / Rmath
Statistical Distributions from R
☆12Updated 10 years ago
Related projects ⓘ
Alternatives and complementary repositories for Rmath
- Bam Read Index - Extract alignments from a bam file by readname☆24Updated 6 months ago
- Small general purpose library for C and Python with focus on bioinformatics.☆29Updated 2 years ago
- ☆15Updated 2 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆33Updated last year
- ☆14Updated last year
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 6 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 5 years ago
- ☆28Updated last year
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated last year
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆12Updated 2 weeks ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- Python bindings to minimap2☆16Updated 7 years ago
- BitMapperBS: a fast and accurate read aligner for whole-genome bisulfite sequencing☆28Updated 5 years ago
- ☆21Updated 2 months ago
- A utility for merging and genotyping Illumina-style GVCFs.☆32Updated 5 years ago
- Mapping-free software for fishing relevant reads in an RNA-Seq sample☆18Updated 3 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆51Updated 2 years ago
- v2.x of the microassembly based somatic variant caller☆14Updated last month
- fastq quality assessment and filtering tool☆18Updated last year
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 3 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 6 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 3 years ago
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆13Updated last year
- A software package for detection of copy number alterations from tumor samples☆12Updated 9 years ago
- Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.☆15Updated last year
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago