bystrogenomics / bystro-vcfLinks
Extremely fast Variant Call Format annotation
☆10Updated 6 months ago
Alternatives and similar repositories for bystro-vcf
Users that are interested in bystro-vcf are comparing it to the libraries listed below
Sorting:
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 4 months ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- Multiplex Primer Design☆12Updated 5 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- Statistical Distributions from R☆12Updated 11 years ago
- Multiplex Primer Design☆21Updated 4 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated 11 months ago
- drunk on perbase pileups and lua expressions☆19Updated last month
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Tools to process LIANTI sequence data☆23Updated 6 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Sample Contamination Estimate from VCF☆19Updated 7 months ago
- ☆23Updated last month
- Fast, accurate and simple to use command line tool for variant detection in NGS data.☆12Updated 5 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆20Updated this week
- Integrated Variant Caller☆17Updated 7 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- Natural Language Search and Analysis of High Dimensional Genomic Data☆47Updated 3 weeks ago
- v2.x of the microassembly based somatic variant caller☆24Updated last week
- Bam Read Index - Extract alignments from a bam file by readname☆26Updated last year
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated 2 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 7 years ago
- full taxonomer cython repository☆22Updated 5 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- The Modular Aligner and The Modular SV Caller☆46Updated last year
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago