kloetzl / libdnaLinks
♥ Essential Functions for DNA Manipulation
☆20Updated 4 months ago
Alternatives and similar repositories for libdna
Users that are interested in libdna are comparing it to the libraries listed below
Sorting:
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- ☆24Updated 4 years ago
- Implicit Interval Tree with Interpolation Index☆41Updated 3 years ago
- De Bruijn graph representation in low memory☆35Updated last year
- A Pedantic FASTA Parser and Tool Set☆14Updated 5 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- 1-code framework: docs, C-library, and tools☆25Updated 2 weeks ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Updated 7 years ago
- ☆28Updated 6 months ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated 8 months ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 6 years ago
- Pan-genome Seed Index☆20Updated 7 months ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Updated 8 months ago
- Efficient, parallel compression for terabyte-scale data☆48Updated last month
- Small general purpose library for C and Python with focus on bioinformatics.☆31Updated 3 years ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Updated last year
- Histosketching Using Little Kmers☆56Updated 2 years ago
- C++ library for parsing several formats in bioinformatics☆10Updated 2 years ago
- ☆13Updated 9 years ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆52Updated last year
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 6 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆31Updated 5 years ago
- ☆24Updated 2 months ago
- Indel-aware consensus for aligned BAM☆21Updated 2 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 3 months ago
- Suite of tools for use in genome assembly and consensus. Work in progress.☆31Updated 4 years ago
- Python bindings to minimap2☆16Updated 8 years ago
- An experimental tool to find approximate max-cuts in a large graph☆10Updated 4 years ago