♥ Essential Functions for DNA Manipulation
☆20Jun 15, 2025Updated 11 months ago
Alternatives and similar repositories for libdna
Users that are interested in libdna are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14May 12, 2023Updated 3 years ago
- A Pedantic FASTA Parser and Tool Set☆14Apr 22, 2020Updated 6 years ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Oct 28, 2023Updated 2 years ago
- Finding Maximal Exact Matches (MEMs) using a Sampled LCP Array☆10Mar 7, 2024Updated 2 years ago
- Hardware go brrr bounded context suffix array construction algorithm☆19Nov 1, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Mar 6, 2023Updated 3 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Dec 16, 2019Updated 6 years ago
- ☆11Jun 14, 2023Updated 2 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆51May 22, 2024Updated 2 years ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Aug 8, 2018Updated 7 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Aug 3, 2023Updated 2 years ago
- Source code for SimBac, a bacterial genome simulator☆14Sep 20, 2024Updated last year
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- A very fast interval tree data structure☆132Feb 3, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆32Dec 16, 2022Updated 3 years ago
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 5 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Aug 27, 2019Updated 6 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Jul 24, 2025Updated 10 months ago
- An efficient index for the colored, compacted, de Bruijn graph☆112Mar 11, 2026Updated 3 months ago
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆31Apr 20, 2020Updated 6 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Feb 1, 2021Updated 5 years ago
- Go implementation of ntHash☆20Sep 16, 2021Updated 4 years ago
- Minhash Index Extended to Knead Kmer Intersection☆11Mar 18, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆24Apr 2, 2021Updated 5 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆40Jul 9, 2021Updated 4 years ago
- Reference-free variant discovery in large eukaryotic genomes☆42Jul 13, 2021Updated 4 years ago
- ☆14Oct 14, 2020Updated 5 years ago
- ABRA2☆97Dec 2, 2022Updated 3 years ago
- ☆17Aug 8, 2025Updated 10 months ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10May 13, 2021Updated 5 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Jun 6, 2024Updated 2 years ago
- A fast seed-embed-extend based sequence mapper and aligner☆23Aug 28, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- C implementation of the Landau-Vishkin algorithm☆36Apr 8, 2022Updated 4 years ago
- kaamer - protein identification based on amino acid kmers☆11Mar 7, 2023Updated 3 years ago
- Lossless VCF compression☆21Mar 4, 2022Updated 4 years ago
- Suite of tools for use in genome assembly and consensus. Work in progress.☆31Mar 22, 2021Updated 5 years ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆86Feb 23, 2025Updated last year
- efficient alignment of strings to partially ordered string graphs☆33Apr 22, 2026Updated last month