Alternatives and similar repositories for libdna:

Users that are interested in libdna are comparing it to the libraries listed below

• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• benedictpaten / sonLib
  Small general purpose library for C and Python with focus on bioinformatics.
  ☆30Updated 2 years ago
• kloetzl / pfasta
  A Pedantic FASTA Parser and Tool Set
  ☆14Updated 5 years ago
• VGP / vgp-tools
  ☆28Updated 3 weeks ago
• Malfoy / Blight
  De Bruijn graph representation in low memory
  ☆36Updated 10 months ago
• rvaser / rala
  Layout module for raw de novo genome assembly of long uncorrected reads.
  ☆21Updated 4 years ago
• lh3 / rmaxcut
  An experimental tool to find approximate max-cuts in a large graph
  ☆11Updated 4 years ago
• cosmo-team / cosmo
  Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.
  ☆51Updated last year
• jts / bri
  Bam Read Index - Extract alignments from a bam file by readname
  ☆25Updated last year
• medvedevgroup / TwoPaCo
  A fast constructor of the compressed de Bruijn graph from many genomes
  ☆40Updated 3 months ago
• medvedevgroup / UST
  ☆25Updated 4 years ago
• vgteam / gssw
  efficient alignment of strings to partially ordered string graphs
  ☆33Updated 3 years ago
• langmead-lab / vargas
  ☆25Updated 3 years ago
• vcflib / tabixpp
  C++ wrapper to tabix indexer
  ☆17Updated last year
• jermp / lphash
  Fast and compact locality-preserving minimal perfect hashing for k-mer sets.
  ☆43Updated last year
• edawson / mkmh
  Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.
  ☆24Updated 4 years ago
• ocxtal / rbread
  Header-only, gzread-like reader for gzip, bz2, and xz.
  ☆12Updated 6 years ago
• karel-brinda / ococo
  Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
  ☆47Updated 6 years ago
• rob-p / FQFeeder
  Self-contained, multi-threaded fasta/q parser
  ☆43Updated 7 months ago
• ddiazdom / lcg
  Efficient, parallel compression for terabyte-scale data
  ☆43Updated 3 months ago
• edawson / rkmh
  Classify sequencing reads using MinHash.
  ☆48Updated 5 years ago
• mlin / iitii
  Implicit Interval Tree with Interpolation Index
  ☆41Updated 2 years ago
• cartoonist / psi
  Pan-genome Seed Index
  ☆20Updated last month
• nanoporetech / minimappy
  Python bindings to minimap2
  ☆16Updated 7 years ago
• jltsiren / bwt-merge
  A tool for merging large BWTs
  ☆26Updated 4 years ago
• Kmer-File-Format / kff-tools
  ☆17Updated last year
• gregorykucherov / spaced-seeds-for-metagenomics
  ☆14Updated 9 years ago
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆41Updated last year
• mklarqvist / djinn
  C++ library for analysing and storing large-scale cohorts of sequence variant data
  ☆17Updated 5 years ago
• splatlab / squeakr
  Squeakr: An Exact and Approximate k -mer Counting System
  ☆85Updated 2 months ago