kloetzl / libdnaLinks
♥ Essential Functions for DNA Manipulation
☆20Updated 6 months ago
Alternatives and similar repositories for libdna
Users that are interested in libdna are comparing it to the libraries listed below
Sorting:
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- 1-code framework: docs, C-library, and tools☆25Updated 2 months ago
- ☆24Updated 4 years ago
- A Pedantic FASTA Parser and Tool Set☆14Updated 5 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆20Updated 4 years ago
- De Bruijn graph representation in low memory☆35Updated last year
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 6 years ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Updated 7 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Updated last month
- ☆28Updated 8 months ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆43Updated 2 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 5 years ago
- Implicit Interval Tree with Interpolation Index☆42Updated 3 years ago
- An experimental tool to find approximate max-cuts in a large graph☆10Updated 4 years ago
- Just a python fasta/q parser based on kseq.h☆14Updated 5 years ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Updated last year
- VariantStore: A Large-Scale Genomic Variant Search Index☆39Updated 4 years ago
- Suite of tools for use in genome assembly and consensus. Work in progress.☆31Updated 4 years ago
- drunk on perbase pileups and lua expressions☆19Updated last month
- Histosketching Using Little Kmers☆56Updated 2 years ago
- Indel-aware consensus for aligned BAM☆21Updated 4 months ago
- ☆24Updated 4 months ago
- Parallel Sequence to Graph Alignment☆36Updated 3 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆86Updated 10 months ago
- Efficient, parallel compression for terabyte-scale data☆55Updated 3 months ago
- nimble aligner that will map your reads to the references on a laptop☆11Updated 8 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Updated 6 years ago
- Small general purpose library for C and Python with focus on bioinformatics.☆31Updated 3 years ago
- Integrated Variant Caller☆17Updated 7 years ago
- Pan-genome Seed Index☆20Updated 9 months ago