mklarqvist / libflagstatsLinks
Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.
☆15Updated 5 years ago
Alternatives and similar repositories for libflagstats
Users that are interested in libflagstats are comparing it to the libraries listed below
Sorting:
- ☆24Updated 2 months ago
- Long Approximate Matches-based Split Aligner☆13Updated 8 years ago
- Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point f…☆11Updated 4 years ago
- Hidden Markov Model based Copy number caller☆20Updated last year
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago
- ☆28Updated 6 months ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- Indel-aware consensus for aligned BAM☆21Updated 2 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- ☆12Updated last month
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 6 years ago
- Utilities to detect and profile `het-kmers`☆11Updated last year
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Updated last year
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Updated 2 years ago
- Detects human contamination in bam files☆16Updated 5 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆38Updated 4 years ago
- ☆14Updated 2 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Updated 5 years ago
- ☆16Updated 3 months ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Updated 2 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 3 years ago
- ☆24Updated 4 years ago
- nimble aligner that will map your reads to the references on a laptop☆11Updated 8 years ago
- ☆16Updated 3 years ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆10Updated last year
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- ☆14Updated 2 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 4 months ago