Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.
☆15Aug 1, 2026Updated last week
Alternatives and similar repositories for libflagstats
Users that are interested in libflagstats are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated 11 months ago
- Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point f…☆11Dec 11, 2020Updated 5 years ago
- ☆20Aug 18, 2020Updated 5 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop☆12Nov 27, 2018Updated 7 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Read CRAM v3 and v2 in node or in the browser☆18Updated this week
- Bam Read Index - Extract alignments from a bam file by readname☆29Apr 22, 2024Updated 2 years ago
- Parallel Sequence to Graph Alignment☆35Nov 26, 2022Updated 3 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23May 19, 2025Updated last year
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Aug 27, 2019Updated 6 years ago
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 6 years ago
- 🧬 Viral genome reference alignment☆12Jan 26, 2021Updated 5 years ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 9 years ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Aug 8, 2018Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.☆55Updated this week
- ☆24Apr 2, 2021Updated 5 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆36Aug 4, 2021Updated 5 years ago
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 4 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆40Jul 9, 2021Updated 5 years ago
- ☆15Mar 9, 2018Updated 8 years ago
- Rust UMI Directional Adjacency Deduplicator☆15Nov 25, 2019Updated 6 years ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Mar 6, 2023Updated 3 years ago
- VCF (variant call format) parser☆26Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Long Approximate Matches-based Split Aligner☆13Apr 6, 2017Updated 9 years ago
- Python-like decorator in Rust☆15May 14, 2020Updated 6 years ago
- Portable Crystal binary distributions for Linux on x86_64☆15Mar 22, 2021Updated 5 years ago
- ☆26Jul 1, 2026Updated last month
- An R package to detect, classify, and visualize genome rearrangements☆15Aug 4, 2020Updated 6 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆46Jul 24, 2025Updated last year
- Pan-genome Seed Index☆20Jul 3, 2026Updated last month
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆12Jan 10, 2017Updated 9 years ago
- Minhash Index Extended to Knead Kmer Intersection☆11Mar 18, 2020Updated 6 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Next-Generation Sequencing (NGS) Data Processing Tool & Library☆10May 9, 2023Updated 3 years ago
- ☆14May 12, 2023Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Oct 22, 2019Updated 6 years ago
- ☆32Dec 16, 2022Updated 3 years ago
- AStarix: Fast and Optimal Sequence-to-Graph Aligner☆74Dec 25, 2021Updated 4 years ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆132Oct 14, 2025Updated 9 months ago
- An efficient index for the colored, compacted, de Bruijn graph☆112Jun 19, 2026Updated last month