sbg / smart-variant-filteringLinks
☆29Updated 4 years ago
Alternatives and similar repositories for smart-variant-filtering
Users that are interested in smart-variant-filtering are comparing it to the libraries listed below
Sorting:
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 2 months ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Interpretable prioritization of splice variants in diagnostic next-generation sequencing☆18Updated last year
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 5 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last week
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 7 years ago
- CNV detection tool for targeted NGS panel data☆16Updated 3 years ago
- ☆22Updated 2 years ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 5 years ago
- Generic human DNA variant annotation pipeline☆58Updated last year
- v2.x of the microassembly based somatic variant caller☆23Updated 3 months ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- CAVA (Clinical Annotation of VAriants)☆14Updated 7 years ago
- Automated human exome/genome variants detection from FASTQ files☆23Updated 4 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated 2 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 6 years ago