sfu-compbio / sinvict
SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA
☆27Updated 4 years ago
Alternatives and similar repositories for sinvict:
Users that are interested in sinvict are comparing it to the libraries listed below
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 8 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- ☆46Updated 5 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆22Updated last year
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆27Updated 10 months ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- for detecting internal tandem duplication from genome sequence data.☆11Updated 5 years ago
- Concordance and contamination estimator for tumor–normal pairs☆58Updated 5 months ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆76Updated last year
- CNV screening and annotation tool☆25Updated 8 years ago
- ☆23Updated 8 months ago
- A bioinformatics tool for SV detection and virus integration discovery☆20Updated 7 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 6 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆19Updated 4 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls☆43Updated 3 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆97Updated 2 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆49Updated 2 years ago
- Filters for false-positive mutation calls in NGS☆30Updated 6 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- An awk-like VCF parser☆56Updated last year
- Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods☆46Updated 2 years ago