sfu-compbio / sinvict
SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA
☆27Updated 4 years ago
Alternatives and similar repositories for sinvict:
Users that are interested in sinvict are comparing it to the libraries listed below
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆20Updated 2 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆31Updated 8 years ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆22Updated last year
- Tools for processing and analyzing structural variants.☆32Updated 9 years ago
- ☆45Updated 5 years ago
- BIC@MSKCC Variants Pipeline☆23Updated last year
- CN-Learn☆29Updated 4 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆18Updated 3 years ago
- Concordance and contamination estimator for tumor–normal pairs☆56Updated 2 months ago
- ☆51Updated 2 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆49Updated 2 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 2 years ago
- Automated human exome/genome variants detection from FASTQ files☆22Updated 3 years ago
- heuristics to merge structural variant calls in VCF format.☆35Updated 8 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆30Updated last year
- R package for inferring copy number from read depth☆32Updated 2 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- Deconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity☆39Updated 7 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 5 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆25Updated 7 months ago
- for detecting internal tandem duplication from genome sequence data.☆11Updated 5 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- CNV screening and annotation tool☆24Updated 8 years ago
- A bioinformatics tool for SV detection and virus integration discovery☆20Updated 7 years ago
- ☆13Updated 7 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆20Updated last year