B-UMMI / INNUcaLinks
INNUENDO quality control of reads, de novo assembly and contigs quality assessment, and possible contamination search
☆15Updated 2 years ago
Alternatives and similar repositories for INNUca
Users that are interested in INNUca are comparing it to the libraries listed below
Sorting:
- Colinear block visualisation tool☆31Updated last year
- Predict MLST directly from uncorrected long reads☆27Updated 2 weeks ago
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆28Updated 4 months ago
- Intra-species bacterial contamination detection☆25Updated 9 months ago
- Predict plasmids from uncorrected long read data☆41Updated 2 weeks ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 2 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆64Updated 5 months ago
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆11Updated 11 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆56Updated 7 months ago
- Automated strain separation of low-complexity metagenomes☆52Updated 4 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆31Updated this week
- CFSAN Shigella Typing Pipeline☆15Updated 2 years ago
- Recombination-free trees☆60Updated 2 months ago
- Split Kmer Analysis☆65Updated 3 years ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 2 months ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆26Updated last year
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 2 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations☆27Updated last year
- Order and orientation of complete bacterial genomes☆29Updated 4 months ago
- Plasmid analysis using rearrangement distances☆46Updated 2 months ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆41Updated 2 months ago
- Get microbial sequence data easier and faster☆28Updated 6 years ago