B-UMMI / INNUcaLinks
INNUENDO quality control of reads, de novo assembly and contigs quality assessment, and possible contamination search
☆15Updated 2 years ago
Alternatives and similar repositories for INNUca
Users that are interested in INNUca are comparing it to the libraries listed below
Sorting:
- Predict MLST directly from uncorrected long reads☆27Updated 3 years ago
- Intra-species bacterial contamination detection☆25Updated 5 months ago
- Colinear block visualisation tool☆31Updated last year
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆59Updated last month
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆26Updated 9 months ago
- reference-based long read assemblies of bacterial genomes☆50Updated 3 years ago
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆11Updated 7 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- CFSAN Shigella Typing Pipeline☆14Updated 2 years ago
- Recombination-free trees☆58Updated 3 months ago
- Split Kmer Analysis☆65Updated 3 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆52Updated 3 months ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆36Updated 3 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Predict plasmids from uncorrected long read data☆40Updated 5 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆30Updated this week
- Interactive, web tool for exploring pan-genome of bacterial strains☆46Updated 2 years ago
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆26Updated last year
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 2 weeks ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Order and orientation of complete bacterial genomes☆28Updated this week
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆26Updated 2 years ago
- Genome size estimation from long read overlaps☆58Updated last week
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆32Updated 2 months ago
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated last year