hsinnan75 / MapCallerLinks
MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes
☆30Updated 4 years ago
Alternatives and similar repositories for MapCaller
Users that are interested in MapCaller are comparing it to the libraries listed below
Sorting:
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Population-wide Deletion Calling☆35Updated 5 months ago
- Structural variant (SV) analysis tools☆38Updated last year
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- ☆51Updated 6 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 3 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆38Updated 2 years ago
- Structural variant caller☆55Updated 3 years ago
- This is the Haplotypo repository☆20Updated last year
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- ☆28Updated 2 years ago
- toolkit to process gtf files☆17Updated 3 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- Tools for merging Tandem Repeat VCF files☆34Updated 5 months ago
- SV genotyping with long reads☆39Updated 2 years ago
- ☆11Updated 10 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Updated 4 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- Distribution of TEs and their relationship to genes in host genome☆23Updated 2 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆22Updated 6 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 2 weeks ago