hsinnan75 / MapCaller
MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes
☆30Updated 3 years ago
Alternatives and similar repositories for MapCaller:
Users that are interested in MapCaller are comparing it to the libraries listed below
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 3 years ago
- Population-wide Deletion Calling☆35Updated 4 months ago
- Adapters for trimming☆30Updated 5 years ago
- Structural variant caller☆54Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Identification of segmental duplications in the genome☆26Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- toolkit to process gtf files☆16Updated 3 years ago
- This is the Haplotypo repository☆20Updated 7 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- Combine reference and assembled transcriptomes for RNA-Seq analysis☆20Updated 4 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆21Updated 7 years ago
- genomic alignment similarity search tool☆19Updated 7 months ago
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆21Updated 5 years ago
- DensityMap is perl tool for the visualization of features density along chromosomes☆17Updated 2 years ago
- ☆10Updated 10 years ago
- The shiny app that accompanies the ngsReports R package☆14Updated 3 years ago
- SV genotyping with long reads☆40Updated last year
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- ☆33Updated 9 months ago
- Transposable element polymorphism identification☆32Updated 4 years ago
- Improved Phased Assembler☆27Updated 2 years ago
- Evolutionary Transcriptomics with R☆41Updated this week
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 8 months ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆23Updated 3 years ago
- Find Unique genomic Regions☆29Updated last week
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated 7 months ago