MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes
☆30Feb 1, 2021Updated 5 years ago
Alternatives and similar repositories for MapCaller
Users that are interested in MapCaller are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Mar 6, 2023Updated 3 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆40Jul 9, 2021Updated 4 years ago
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated last year
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 5 years ago
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Quality control on genetic variants from next-generation sequencing data using random forest☆20May 26, 2022Updated 4 years ago
- Recommended Graphtyper pipelines☆15Feb 22, 2021Updated 5 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 3 years ago
- Population genetics analysis on VG☆17Apr 22, 2021Updated 5 years ago
- A read extraction and realignment tool for next generation sequencing data☆108Oct 29, 2022Updated 3 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆144Aug 24, 2025Updated 10 months ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- Ultra-efficient mapping-free structural variation genotyper☆20Jul 28, 2021Updated 4 years ago
- Variant call verification☆18May 12, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Oct 22, 2019Updated 6 years ago
- REINDEER REad Index for abuNDancE quERy☆56Jul 6, 2025Updated 11 months ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- ☆11Dec 12, 2014Updated 11 years ago
- ☆32Dec 16, 2022Updated 3 years ago
- A k-mer frequency statistics software☆15Nov 19, 2021Updated 4 years ago
- ☆21Jul 6, 2023Updated 2 years ago
- Fast, Accurate, and Complete SSR Detection in Genomic Sequences☆11Jun 29, 2020Updated 6 years ago
- Haplotype-aware genome assembly toolkit☆30Jan 8, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆14May 12, 2023Updated 3 years ago
- a broadly applicable tool for automated gene identification and retrieval☆42Jun 16, 2026Updated 2 weeks ago
- A program to call variants from genome alignment☆83Apr 29, 2025Updated last year
- ☆15Dec 8, 2022Updated 3 years ago
- Graph realignment tools for structural variants☆168Dec 8, 2022Updated 3 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- An experimental tool to estimate the similarity between all pairs of contigs☆40Apr 12, 2021Updated 5 years ago
- ☆24Aug 25, 2025Updated 10 months ago
- ☆85Mar 3, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆30Mar 5, 2018Updated 8 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆23Jun 17, 2024Updated 2 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Sep 13, 2019Updated 6 years ago
- Parallel Sequence to Graph Alignment☆35Nov 26, 2022Updated 3 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 6 months ago
- Filter of Pairwise Alignement☆44Jan 31, 2022Updated 4 years ago
- ☆44Nov 20, 2021Updated 4 years ago