☆14May 12, 2023Updated 3 years ago
Alternatives and similar repositories for FAME
Users that are interested in FAME are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Oct 28, 2023Updated 3 years ago
- BitMapperBS: a fast and accurate read aligner for whole-genome bisulfite sequencing☆31Sep 15, 2019Updated 7 years ago
- likelihood calculations over a tree to support ancient DNA Y chr analysis and more☆11Jul 4, 2023Updated 3 years ago
- ♥ Essential Functions for DNA Manipulation☆20Jun 15, 2025Updated last year
- ☆32Dec 16, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Jan 28, 2022Updated 4 years ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Mar 6, 2023Updated 3 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆16Aug 1, 2026Updated 3 months ago
- A port of the matrixStats API to work with DelayedMatrix objects from the DelayedArray package☆15May 8, 2026Updated 5 months ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 7 years ago
- BISulfite-seq CUI Toolkit☆70Jul 18, 2026Updated 3 months ago
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated 3 months ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆20Oct 23, 2026Updated last week
- Predicting regulatory DNA elements based on epigenomic signatures☆31Jun 26, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆66May 9, 2025Updated last year
- wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data☆29Jul 31, 2022Updated 4 years ago
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Sep 30, 2024Updated 2 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Feb 1, 2021Updated 5 years ago
- The Modular Aligner and The Modular SV Caller☆47Jul 18, 2023Updated 3 years ago
- Statistical Distributions from R☆12Apr 24, 2014Updated 12 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Aug 27, 2019Updated 7 years ago
- A k-mer frequency statistics software☆15Nov 19, 2021Updated 4 years ago
- A tool for managing your pores☆10Jul 22, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆46Sep 29, 2026Updated last month
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆28Jun 6, 2024Updated 2 years ago
- Fast alignment tool based on bwa-mem☆29Feb 22, 2026Updated 8 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Jul 27, 2026Updated 3 months ago
- Flexible omics pipeline☆17Oct 16, 2025Updated last year
- Two pass alignment for long reads☆22Mar 9, 2021Updated 5 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆36Aug 4, 2021Updated 5 years ago
- Ultra Fast NGS Data QC Tool☆28Feb 14, 2021Updated 5 years ago
- Read CRAM v3 and v2 in node or in the browser