FischerJo / FAMELinks
☆14Updated 2 years ago
Alternatives and similar repositories for FAME
Users that are interested in FAME are comparing it to the libraries listed below
Sorting:
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 2 months ago
- ☆21Updated this week
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated last month
- ☆16Updated 2 weeks ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 weeks ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆15Updated 6 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Two pass alignment for long reads☆22Updated 4 years ago
- Filter and prioritize fusion calls☆20Updated 11 months ago
- Mapping-free software for fishing relevant reads in an RNA-Seq sample☆18Updated 4 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆11Updated 5 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 6 months ago
- Reducing reference bias using multiple population reference genomes☆33Updated last year
- ☆13Updated 3 weeks ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆18Updated last year
- Bam Read Index - Extract alignments from a bam file by readname☆27Updated last year
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- COMETgazer mehylation analysis software suite☆10Updated 6 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Ultra Fast NGS Data QC Tool☆26Updated 4 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Processing and analysis of data coming from Illumina sequencing machines☆10Updated last month
- Unfazed by genomic variant phasing☆27Updated last year