RabbitMash: an efficient highly optimized implementation of Mash.
☆20Oct 28, 2023Updated 2 years ago
Alternatives and similar repositories for RabbitMash
Users that are interested in RabbitMash are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DartMinHash: Fast Sketching for Weighted Sets☆12Dec 8, 2025Updated 7 months ago
- K-mer substring space decomposition☆44May 27, 2026Updated last month
- interactive Multi Objective K-mer Analysis☆25Mar 5, 2023Updated 3 years ago
- A k-mer frequency statistics software☆15Nov 19, 2021Updated 4 years ago
- A more efficient quality control tool for sequencing data☆33May 27, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆14May 12, 2023Updated 3 years ago
- A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.☆55Updated this week
- ☆15Dec 8, 2022Updated 3 years ago
- Just a python fasta/q parser based on kseq.h☆14Jul 13, 2020Updated 6 years ago
- AStarix: Fast and Optimal Sequence-to-Graph Aligner☆74Dec 25, 2021Updated 4 years ago
- RabbitKSSD: accelerating genome distance estimation on modern multi-core architectures☆12Jun 5, 2024Updated 2 years ago
- ☆24Apr 2, 2021Updated 5 years ago
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Sep 30, 2024Updated last year
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆33Aug 26, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Minimum plain text representation of kmer sets☆18Jan 30, 2025Updated last year
- Banded Striped DNA Sequence Alignment☆54May 9, 2023Updated 3 years ago
- De novo genome assembler.☆12Jul 30, 2018Updated 7 years ago
- Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop☆75Apr 1, 2026Updated 3 months ago
- ProbMinHash – A Class of Locality-Sensitive Hash Algorithms for the (Probability) Jaccard Similarity☆44Oct 26, 2020Updated 5 years ago
- Fast hash function for DNA/RNA sequences☆110Jul 3, 2026Updated 3 weeks ago
- An Fast variant calling tool to detection germline and somatic variants☆12Feb 21, 2026Updated 5 months ago
- Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data☆31Feb 7, 2026Updated 5 months ago
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- REINDEER REad Index for abuNDancE quERy☆56Jul 6, 2025Updated last year
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Apr 14, 2025Updated last year
- A FASTQ lossless compression algorithm especially designed for nanopore sequencing FASTQ files.☆10Jul 2, 2020Updated 6 years ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 6 years ago
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆102May 14, 2026Updated 2 months ago
- Aligns short reads using dynamic seed size with strobemers☆203Updated this week
- ♥ Essential Functions for DNA Manipulation☆20Jun 15, 2025Updated last year
- Fast and space-efficient taxonomic classification of long reads☆46Jul 16, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆20Jan 13, 2026Updated 6 months ago
- Histosketching Using Little Kmers☆56May 25, 2023Updated 3 years ago
- I am currently a Senior Researcher at L3S Research Center, Leibniz University Hannover, Germany.☆24May 17, 2021Updated 5 years ago
- A novel method for sequence similarity estimation☆28Mar 23, 2024Updated 2 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆40Jul 9, 2021Updated 5 years ago
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- ☆14Jan 31, 2020Updated 6 years ago