Alternatives and similar repositories for RabbitMash

Users that are interested in RabbitMash are comparing it to the libraries listed below

• RabbitBio / RabbitQCPlus
  A more efficient quality control tool for sequencing data
  ☆31Updated 5 months ago
• lh3 / gffio
  ☆32Updated 2 years ago
• IndexThePlanet / LoganSearch
  A k-mer search engine for all Sequence Read Archive public accessions
  ☆35Updated last year
• RitchieLabIGH / iMOKA
  interactive Multi Objective K-mer Analysis
  ☆23Updated 2 years ago
• ekg / edyeet
  base-accurate DNA sequence alignments using edlib and mashmap2
  ☆32Updated 4 years ago
• gcgreenberg / LexicHash
  A novel method for sequence similarity estimation
  ☆28Updated last year
• piyuranjan / SNIKT
  Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…
  ☆17Updated 2 years ago
• tlemane / kmdiff
  Differential k-mer analysis
  ☆37Updated last year
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 3 years ago
• PROBIC / mSWEEP
  mSWEEP High-resolution sweep metagenomics using fast probabilistic inference
  ☆14Updated last year
• StephenHwang / MEMO
  MEMO: MEM-based pangenome indexing for k-mer queries
  ☆18Updated last year
• bluenote-1577 / devider
  Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs
  ☆31Updated last month
• prophyle / prophasm
  ProphAsm – a rapid computation of simplitigs directly from k-mer sets
  ☆25Updated 2 years ago
• at-cg / minichain
  Long-read aligner to pangenome graphs
  ☆27Updated last year
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆35Updated 4 months ago
• bo1929 / krepp
  A k-mer-based maximum likelihood method for estimating distances of reads to genomes and phylogenetic placement.
  ☆16Updated this week
• marschall-lab / gaftools
  General purpose utility related to GAF files
  ☆29Updated last month
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆39Updated last year
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆25Updated 11 months ago
• richarddurbin / syng
  syncmer graphs, and perhaps other sorts of sequence graphs
  ☆21Updated 7 months ago
• thegenemyers / PHASE-MERS
  Utilities to detect and profile `het-kmers`
  ☆11Updated last year
• iqbal-lab-org / varifier
  Variant call verification
  ☆16Updated 5 months ago
• Kmer-File-Format / kff-reference
  Contains the description of a file format to store kmers and associated values
  ☆33Updated 3 years ago
• JMencius / LongBow
  Basecalling configuration prediction through FASTQ files
  ☆31Updated 5 months ago
• kamimrcht / ELECTOR
  ELECTOR: EvaLuator of Error Correction Tools for lOng Reads
  ☆15Updated 4 years ago
• SR-Martin / alvis
  ☆20Updated last year
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆35Updated 6 months ago
• shenwei356 / wfa
  Wavefront alignment algorithm (WFA) in Golang
  ☆32Updated 3 months ago
• yanboANU / Kmer2SNP
  ☆26Updated 4 years ago
• treangenlab / Olivar
  Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens
  ☆32Updated 2 weeks ago