ML-Bioinfo-CEITEC / ENNGeneLinks
ENNGene: an Easy Neural Network model building tool for Genomics
☆11Updated 3 years ago
Alternatives and similar repositories for ENNGene
Users that are interested in ENNGene are comparing it to the libraries listed below
Sorting:
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆56Updated 8 months ago
- MEME motif-based sequence analysis tools (http://meme-suite.org), with FreeBSD tweaks☆12Updated 8 years ago
- Blazing fast toolkit to work with .hic and .cool files☆41Updated this week
- Gapless, reference-quality Southern Han Chinese genome assembly and annotation☆12Updated 3 years ago
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆32Updated 6 months ago
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated last year
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated last year
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- Feature-rich Python implementation of the tximport package for gene count estimation.☆37Updated last week
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Updated 11 months ago
- Read, parse and operate different multiple input file formats with OpenVariant☆14Updated 5 months ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 4 years ago
- Long RNA-seq analysis workflow☆20Updated 2 weeks ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆20Updated 2 years ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated 2 years ago
- ☆39Updated 3 months ago
- A lightweight reimplementation of some of the algorithms in the MEME suite in Python.☆22Updated 2 months ago
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Updated 9 months ago
- Comprehensive and scalable differential splicing analyses☆17Updated 7 months ago
- simplified cellranger for long-read data☆19Updated 2 months ago
- A tool for projecting genomic alignments to transcriptomic coordinates☆36Updated last year
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆14Updated 3 years ago
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year
- ☆10Updated 7 months ago
- A computational algorithm and software tool for fast and accurate detection of gene fusion by long-read transcriptome sequencing☆21Updated 4 years ago
- ☆29Updated 2 years ago
- ☆20Updated 5 months ago
- 🤖 Open‑source deep-learning-based splice‑site predictor that decodes splicing patterns across species☆28Updated 3 months ago
- Versatile FASTA/FASTQ demultiplexer.☆33Updated last year
- Comparison of Hi-C Experiments using Structural Similarity.☆27Updated 2 years ago