ENNGene: an Easy Neural Network model building tool for Genomics
☆11Mar 31, 2022Updated 4 years ago
Alternatives and similar repositories for ENNGene
Users that are interested in ENNGene are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆28Feb 21, 2023Updated 3 years ago
- Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…☆16Jun 25, 2025Updated 10 months ago
- A framework to score and analyze variant effects genome-wide using ChromBPNet models☆16Mar 2, 2026Updated 2 months ago
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated 2 years ago
- ☆26Nov 7, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Machine learning methods for DNA sequence analysis.☆63Feb 27, 2026Updated 2 months ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆40Mar 27, 2025Updated last year
- Finding patch of conserved amino acid sites in 3D structure☆14Apr 13, 2025Updated last year
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 6 months ago
- PyTorch implementation of Basenji2.☆21Apr 29, 2025Updated last year
- Atomic references for Ruby (merged with concurrent-ruby)☆25May 10, 2018Updated 7 years ago
- pangenome from maximal blocks in an MSA☆11Sep 17, 2024Updated last year
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 6 months ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- The Rubinius Book☆17Sep 17, 2025Updated 7 months ago
- Analysis tool for NG-Capture-C, Tri-C and Tiled-C data☆10Updated this week
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆24Updated this week
- bash script to search for centromeric repeat patterns in PacBio data, using several current tools (trf and R)☆13Dec 1, 2016Updated 9 years ago
- An Actor library that uses the Rubinius core API☆23Dec 11, 2012Updated 13 years ago
- Statistically Significant loops from HiChIP data☆46Apr 17, 2024Updated 2 years ago
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 2 years ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 7 months ago
- Web based viewer for small to medium GFA format files, similar to Bandage☆12Nov 14, 2025Updated 5 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆10Oct 24, 2024Updated last year
- ☆17Mar 17, 2026Updated last month
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Nov 15, 2024Updated last year
- ☆11Jun 17, 2023Updated 2 years ago
- A lightweight reimplementation of some of the algorithms in the MEME suite in Python.☆32Mar 17, 2026Updated last month
- AlfaPang builds pangenome graphs without alignments or references.☆16Nov 7, 2025Updated 5 months ago
- Methylation analysis pipeline for genome graph☆15May 25, 2025Updated 11 months ago
- ☆25Aug 20, 2024Updated last year
- ☆15Jun 29, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆10Dec 11, 2024Updated last year
- Patho-DBiT is a platform to spatially decode RNA Biology in archival FFPE tissues.☆14Aug 15, 2024Updated last year
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Jan 22, 2025Updated last year
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆17Aug 12, 2022Updated 3 years ago
- ANI based satellite annotation☆26Mar 2, 2026Updated 2 months ago
- Genotyping of copy number sensitive allele-specific haplotypes☆28Nov 6, 2025Updated 5 months ago