Alternatives and similar repositories for snputils

Users that are interested in snputils are comparing it to the libraries listed below

• twlab / methylGrapher
  Methylation analysis pipeline for genome graph
  ☆14Updated 8 months ago
• avaughn271 / CLUES2
  The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.
  ☆18Updated 9 months ago
• tskit-dev / tsdate
  Infer the age of ancestral nodes in a tree sequence.
  ☆24Updated this week
• tulerpetontidae / psmc-python
  A reimplementation of a classical PSMC method in python for educational purposes
  ☆17Updated last year
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆31Updated 7 months ago
• davidebolo1993 / cosigt
  COsine SImilarity-based Genotyper using pangenomes
  ☆25Updated 2 weeks ago
• malthesr / winsfs
  Site frequency spectrum estimation based on window expectation-maximisation algorithm
  ☆14Updated 2 years ago
• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆35Updated last week
• oclb / pantree
  ☆21Updated this week
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆21Updated last year
• lntran26 / donni
  machine learning applications for dadi
  ☆16Updated last year
• AI-sandbox / archetypal-analysis
  ☆15Updated 2 years ago
• mktle / colorSV
  somatic SV calling on matched tumor-normal co-assembly graphs
  ☆22Updated last year
• marbl / anianns
  ANI based satellite annotation
  ☆22Updated 2 months ago
• JustinChu / ntsm
  This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…
  ☆30Updated last year
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆33Updated 4 years ago
• ChenHuaLab / HaploSweep
  HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.
  ☆11Updated last year
• lh3 / panmask
  Easy genomic regions for short-read variant calling
  ☆45Updated 4 months ago
• human-pangenomics / hprc-tutorials
  ☆19Updated last year
• hitbc / gcSV
  ☆22Updated 3 weeks ago
• DessimozLab / OMAnnotator
  Consensus genome annotation using OMA
  ☆31Updated 3 weeks ago
• marbl / T2T-Browser
  Genome browser hub for the T2T genomes and resources
  ☆27Updated 4 months ago
• Sendrowski / fastDFE
  Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…
  ☆18Updated 2 weeks ago
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆22Updated 4 years ago
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆35Updated 3 years ago
• marbl / training
  Genome Assembly 102
  ☆17Updated 9 months ago
• GeneDx / pgr-tk-notebooks
  ☆16Updated 2 years ago
• Markusjsommer / TD2
  TD2
  ☆31Updated 3 weeks ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆40Updated 2 years ago
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆23Updated last year