Rapid population clustering with autoencoders
☆87Sep 29, 2025Updated 5 months ago
Alternatives and similar repositories for neural-admixture
Users that are interested in neural-admixture are comparing it to the libraries listed below
Sorting:
- A fast, scalable, and accurate local ancestry method.☆108Feb 11, 2026Updated 3 weeks ago
- A Python library for processing genomes with ease☆44Updated this week
- ☆33Aug 2, 2022Updated 3 years ago
- A pipeline that accepts a VCF file to run through Admixture☆63Jan 2, 2025Updated last year
- ☆13Jan 16, 2026Updated last month
- Rapid and accurate ancestry inference using SNVs.☆28Aug 15, 2025Updated 6 months ago
- The tools are used for displaying hic signal of genome☆24Jan 4, 2021Updated 5 years ago
- Fast analysis and visualization of latent clusters in population genetic data☆78Mar 29, 2022Updated 3 years ago
- ☆26Mar 23, 2024Updated last year
- Toolkit for calling structural variants using short or long reads☆115Feb 11, 2026Updated 3 weeks ago
- A Toolkit for analyzing next-generation DNA Re-Sequencing data☆15Feb 15, 2022Updated 4 years ago
- ☆15Dec 7, 2023Updated 2 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 5 years ago
- ☆20Sep 6, 2024Updated last year
- a gap-filling tools of genome in complex region.☆24Dec 30, 2025Updated 2 months ago
- ☆10Jun 13, 2020Updated 5 years ago
- Python package for detecting positive selective sweeps using time-series genomics sampling data.☆19Apr 9, 2024Updated last year
- ☆41May 19, 2025Updated 9 months ago
- ☆41Jun 8, 2023Updated 2 years ago
- Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data☆26Jul 8, 2022Updated 3 years ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Nov 25, 2024Updated last year
- A statistical framework for reference-free inference of archaic local ancestry☆16Nov 8, 2019Updated 6 years ago
- Genome Analysis Workshop (Jena 2016) material☆18Mar 3, 2017Updated 9 years ago
- Genome-wide scan for balancing selection using beta statistic☆32Apr 26, 2023Updated 2 years ago
- Haplotype and population structure inference using neural networks.☆28Dec 5, 2024Updated last year
- A tool for quick and accurate calculation of syntenic diversity.☆42Sep 22, 2025Updated 5 months ago
- Simple pileup-based variant caller☆94Apr 25, 2025Updated 10 months ago
- AncestralPaths is a local ancestry painting technique based on genealogies produced by RELATE. The method aims to assign 'path' ancestrie…☆11Jun 29, 2023Updated 2 years ago
- ☆15Mar 24, 2025Updated 11 months ago
- Pipelines to run STRUCTURE using multiple front-ends (CLUMPAK+StrAuto, Structure_threader)☆12Oct 5, 2020Updated 5 years ago
- Multi-genome synteny block visualization tool☆55Updated this week
- Estimate population history parameters from site pattern frequencies.☆12Dec 2, 2025Updated 3 months ago
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆18Feb 28, 2026Updated last week
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.☆89Updated this week
- Scalable gVCF merging and joint variant calling for population sequencing projects☆177Apr 12, 2024Updated last year
- ☆29Updated this week
- Sample Contamination Estimate from VCF☆20Nov 6, 2024Updated last year
- Scalable population structure inference☆18Oct 22, 2022Updated 3 years ago