Alternatives and similar repositories for neural-admixture

Users that are interested in neural-admixture are comparing it to the libraries listed below

• rwdavies / STITCH
  STITCH - Sequencing To Imputation Through Constructing Haplotypes
  ☆85Updated 2 months ago
• epi2me-labs / modbam2bed
  ☆52Updated 3 months ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆98Updated 2 years ago
• stevemussmann / admixturePipeline
  A pipeline that accepts a VCF file to run through Admixture
  ☆63Updated last year
• drostlab / LTRpred
  De novo annotation of young retrotransposons
  ☆48Updated 3 years ago
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆115Updated 3 weeks ago
• harvardinformatics / snpArcher
  Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.
  ☆86Updated this week
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆95Updated 8 months ago
• slowkoni / rfmix
  RFMIX - Local Ancestry and Admixture Inference Version 2
  ☆94Updated 3 years ago
• cpockrandt / genmap
  GenMap - Fast and Exact Computation of Genome Mappability
  ☆113Updated last year
• starskyzheng / panpop
  Application of pan-genome for population
  ☆116Updated 2 months ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆120Updated 3 months ago
• HKU-BAL / ClairS-TO
  ClairS-TO - a deep-learning method for tumor-only somatic variant calling
  ☆76Updated last month
• MikkelSchubert / paleomix
  Pipelines and tools for the processing of ancient and modern HTS data.
  ☆48Updated last week
• stschiff / msmc
  Implementation of the multiple sequential markovian coalescent
  ☆89Updated 5 months ago
• sujaikumar / assemblage
  Tools for working with second gen assemblies, fasta sequences, etc
  ☆93Updated 9 years ago
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆38Updated this week
• bioinfo-chru-strasbourg / vcf2circos
  python plotly Circos from VCF
  ☆40Updated last year
• thlee / SNPhylo
  A pipeline to generate a phylogenetic tree from huge SNP data
  ☆93Updated 2 years ago
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆85Updated 3 months ago
• tao-bioinfo / gff3sort
  GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools
  ☆51Updated 5 years ago
• parklab / xTea
  Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
  ☆118Updated 6 months ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆165Updated 3 weeks ago
• pkalbers / geva
  Genealogical Estimation of Variant Age (GEVA)
  ☆32Updated 4 years ago
• alisi1989 / RFMIX2-Pipeline-to-plot
  Here we present a method to plot the outputs of RFMIX version 2
  ☆29Updated last year
• PacificBiosciences / HiPhase
  Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
  ☆80Updated 9 months ago
• EI-CoreBioinformatics / mikado
  Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…
  ☆106Updated 2 weeks ago
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆117Updated 2 months ago
• PacificBiosciences / pb-human-wgs-workflow-snakemake
  DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads
  ☆39Updated 2 years ago
• CshlSiepelLab / phast
  PHAST
  ☆77Updated last week