AI-sandbox / neural-admixtureLinks
Rapid population clustering with autoencoders
☆86Updated 4 months ago
Alternatives and similar repositories for neural-admixture
Users that are interested in neural-admixture are comparing it to the libraries listed below
Sorting:
- ☆52Updated 4 months ago
- STITCH - Sequencing To Imputation Through Constructing Haplotypes☆85Updated last week
- Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.☆87Updated this week
- Simple pileup-based variant caller☆95Updated 9 months ago
- python plotly Circos from VCF☆40Updated last year
- Fast and accurate coordinate conversion between assemblies☆118Updated 3 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆121Updated 3 months ago
- A set of functions to visualise genotypes based on a VCF☆88Updated 4 years ago
- Toolkit for calling structural variants using short or long reads☆115Updated 2 weeks ago
- A pipeline that accepts a VCF file to run through Admixture☆63Updated last year
- PhyloAcc a software to detect the changes of conservation of a genomic region☆34Updated 3 months ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- Application of pan-genome for population☆116Updated 3 months ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆48Updated last week
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆120Updated 2 months ago
- Segmented HAPlotype Estimation and Imputation Tool☆96Updated last month
- RFMIX - Local Ancestry and Admixture Inference Version 2☆95Updated 3 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆47Updated last year
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆76Updated 4 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Updated 6 years ago
- Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file☆52Updated last month
- kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.☆45Updated last year
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆82Updated last week
- Tandem repeat genotyping and visualization from PacBio HiFi data☆131Updated last month
- vcfdist: Accurately benchmarking phased variant calls☆84Updated 4 months ago
- Pinpoints the mutation favored by selection☆34Updated 4 years ago
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆106Updated this week
- ☆27Updated 4 months ago