tulerpetontidae / psmc-pythonLinks
A reimplementation of a classical PSMC method in python for educational purposes
☆16Updated last year
Alternatives and similar repositories for psmc-python
Users that are interested in psmc-python are comparing it to the libraries listed below
Sorting:
- Sampling and inference of genealogies with recombination☆43Updated 3 months ago
- convert PAF format to CHAIN format☆32Updated 5 months ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆13Updated 2 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆53Updated 3 months ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆40Updated last year
- ☆38Updated last week
- Tools and Utilities for msmc and msmc2☆48Updated 2 months ago
- Compute N50/NG50 and auN/auNG☆32Updated 2 years ago
- R-package: Calculation of haplotype blocks and libraries☆33Updated 2 months ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 5 months ago
- Haplotype and population structure inference using neural networks.☆27Updated 10 months ago
- ☆28Updated 2 years ago
- machine learning applications for dadi☆15Updated 8 months ago
- GitHub repository for GenErode, a Snakemake workflow for the analysis of whole-genome sequencing data from historical and modern samples …☆27Updated 2 months ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆57Updated 10 years ago
- Computational Pangenomics☆17Updated 3 years ago
- implicit pangenome graph☆73Updated this week
- Easy genomic regions for short-read variant calling☆44Updated last month
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆34Updated 2 years ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- Genealogical Estimation of Variant Age (GEVA)☆31Updated 4 years ago
- ☆25Updated last year
- Ploidy agnostic phasing pipeline and algorithm☆48Updated last year
- Kmer Analysis of Pileups for Genotyping☆32Updated this week
- a lexicographically-based GTF/GFF sorter☆36Updated 5 months ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆15Updated 6 months ago
- SparsePainter: fast, accurate and fine-scale chromosome painting software based on PBWT and HashMap☆17Updated last month
- Process linked-read data, from raw sequences to phased haplotypes, batteries included. Works with WGS too!☆18Updated this week
- Bayesian reconstruction of ancient DNA fragments☆30Updated last year