tulerpetontidae / psmc-pythonLinks
A reimplementation of a classical PSMC method in python for educational purposes
☆17Updated last year
Alternatives and similar repositories for psmc-python
Users that are interested in psmc-python are comparing it to the libraries listed below
Sorting:
- Sampling and inference of genealogies with recombination☆50Updated 6 months ago
- Genome-wide scan for balancing selection using beta statistic☆30Updated 2 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆57Updated 6 months ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14Updated 2 years ago
- convert PAF format to CHAIN format☆34Updated 8 months ago
- Infer demographic history with the Moran model☆51Updated 7 months ago
- predicting DFE and alpha from polymorphism data☆28Updated 7 years ago
- ☆38Updated 3 months ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆17Updated 9 months ago
- R-package: Calculation of haplotype blocks and libraries☆35Updated 5 months ago
- Genealogical Estimation of Variant Age (GEVA)☆32Updated 4 years ago
- Software for detecting introgression using supervised machine learning☆21Updated 3 years ago
- Tools and Utilities for msmc and msmc2☆49Updated 5 months ago
- ☆25Updated last year
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Updated 2 years ago
- ☆65Updated 3 years ago
- Computational Analysis of Gene Expression Evolution☆45Updated 5 months ago
- WinPCA. A package for windowed principal component analysis.☆44Updated last month
- Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.☆18Updated last year
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated 2 years ago
- ☆29Updated 2 years ago
- machine learning applications for dadi☆16Updated 11 months ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- ☆15Updated 5 years ago
- SparsePainter: fast, accurate and fine-scale chromosome painting software based on PBWT and HashMap☆18Updated 4 months ago
- Assessing confidence in introgression among four populations☆28Updated 4 years ago
- GitHub repository for GenErode, a Snakemake workflow for the analysis of whole-genome sequencing data from historical and modern samples …☆29Updated last month
- The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support☆31Updated last month
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago