Alternatives and similar repositories for psmc-python

Users that are interested in psmc-python are comparing it to the libraries listed below

• popgenmethods / SINGER
  Sampling and inference of genealogies with recombination
  ☆30Updated 3 weeks ago
• CshlSiepelLab / argweaver
  Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)
  ☆13Updated 2 years ago
• lntran26 / donni
  machine learning applications for dadi
  ☆15Updated 5 months ago
• Rosemeis / pcangsd
  Framework for analyzing low depth NGS data in heterogeneous populations using PCA.
  ☆52Updated 3 weeks ago
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆29Updated 2 years ago
• YaolingYang / SparsePainter
  SparsePainter: fast, accurate and fine-scale chromosome painting software based on PBWT and HashMap
  ☆14Updated this week
• avaughn271 / CLUES2
  The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.
  ☆14Updated 3 months ago
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆48Updated last year
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆32Updated last year
• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆27Updated 7 months ago
• bergmanlab / TELR
  TELR is a fast non-reference transposable element detector from long read sequencing data.
  ☆33Updated last year
• shahab-sarmashghi / Skmer
  Fast and accurate tool for estimating genomic distances between genome-skims
  ☆45Updated last year
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆35Updated 2 months ago
• Popgen48 / scalepopgen
  ☆24Updated last year
• avaughn271 / AdmixtureBayes
  ☆20Updated 9 months ago
• llecompte / SVJedi
  SV genotyping with long reads
  ☆39Updated 2 years ago
• enormandeau / snplift
  Transfer coordinates across genomes
  ☆23Updated last month
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆30Updated 4 years ago
• stschiff / msmc2
  ☆59Updated 2 years ago
• grenaud / leeHom
  Bayesian reconstruction of ancient DNA fragments
  ☆28Updated 11 months ago
• pkalbers / geva
  Genealogical Estimation of Variant Age (GEVA)
  ☆29Updated 3 years ago
• simonwhelan / prequal
  PREQUAL: a pre-alignment quality filter for comparative sequence analyses
  ☆32Updated 3 years ago
• xin-huang / dadi-cli
  Automated and distributed population genetic model inference from allele frequency spectra
  ☆17Updated 3 months ago
• birneylab / flexlmm
  Flexible linear mixed model framework for Genome Wide Association Studies
  ☆18Updated last month
• paula-tataru / polyDFE
  predicting DFE and alpha from polymorphism data
  ☆28Updated 6 years ago
• mrvollger / NucFreq
  ☆37Updated last year
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆29Updated 7 months ago
• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆31Updated 3 weeks ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• JustinChu / ntsm
  This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…
  ☆29Updated 7 months ago