Alternatives and similar repositories for psmc-python

Users that are interested in psmc-python are comparing it to the libraries listed below

• popgenmethods / SINGER
  Sampling and inference of genealogies with recombination
  ☆30Updated last week
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆29Updated 2 years ago
• regevs / gamma_smc
  ☆20Updated last year
• Popgen48 / scalepopgen
  ☆24Updated last year
• DessimozLab / OMAnnotator
  Consensus genome annotation using OMA
  ☆24Updated this week
• lntran26 / donni
  machine learning applications for dadi
  ☆15Updated 5 months ago
• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆27Updated 6 months ago
• CshlSiepelLab / argweaver
  Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)
  ☆13Updated 2 years ago
• ComparativeGenomicsToolkit / taffy
  This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files
  ☆27Updated 6 months ago
• pkalbers / geva
  Genealogical Estimation of Variant Age (GEVA)
  ☆29Updated 3 years ago
• simonwhelan / prequal
  PREQUAL: a pre-alignment quality filter for comparative sequence analyses
  ☆32Updated 3 years ago
• mrvollger / NucFreq
  ☆35Updated last year
• Rosemeis / pcangsd
  Framework for analyzing low depth NGS data in heterogeneous populations using PCA.
  ☆51Updated last month
• avaughn271 / CLUES2
  The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.
  ☆13Updated 2 months ago
• grenaud / leeHom
  Bayesian reconstruction of ancient DNA fragments
  ☆28Updated 10 months ago
• xin-huang / dadi-cli
  Automated and distributed population genetic model inference from allele frequency spectra
  ☆17Updated 2 months ago
• DessimozLab / edgehog
  Infering ancestral synteny with hierarchical orthologous groups
  ☆14Updated last week
• sanger-tol / genomeassembly
  Implementation of ToL genome assembly workflows
  ☆20Updated 2 weeks ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆32Updated last year
• MoinSebi / gfa2bin
  ☆24Updated 6 months ago
• birneylab / flexlmm
  Flexible linear mixed model framework for Genome Wide Association Studies
  ☆18Updated 3 weeks ago
• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆42Updated last week
• HuffordLab / GenomeQC
  ☆32Updated 4 years ago
• avaughn271 / AdmixtureBayes
  ☆20Updated 8 months ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• shahab-sarmashghi / Skmer
  Fast and accurate tool for estimating genomic distances between genome-skims
  ☆44Updated last year
• ramachandran-lab / SWIFr
  Sweep Inference Framework (controlling for correlation)
  ☆29Updated 11 months ago
• nterhoeven / blast2bed
  convert a blast output to a bed file
  ☆12Updated 10 years ago
• VIB-PSB / ksrates
  ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…
  ☆19Updated last month
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆30Updated 3 years ago